Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_020202.1 Length=37740 Score E Sequences producing significant alignments: (Bits) Value seq124742 131 4e-26 >seq124742 Length=51505 Score = 131 bits (144), Expect = 4e-26 Identities = 127/161 (79%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 26488 CGATGCAGGAAGCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26547 ||||||||||||| ||||||||||| || || || |||||||| |||||||| |||| Sbjct 24004 CGATGCAGGAAGCCACCGGCAAGGCAGTAAGCGAGACCGTCGCCGAATTCTCCAAACTGG 24063 Query 26548 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 26606 | ||||| ||||| || |||| || || ||| || ||| | || ||||||||||| ||| Sbjct 24064 CAGACGACCCGGTAAAGTCCTCTGCTGC-GCTGAATGAGCAGTACCACTACCTGACGGCC 24122 Query 26607 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGA 26647 ||||||||| ||| || || || || || || || ||||| Sbjct 24123 TCGGTTTACTCGCAAATCGCGGCACTGGAGCAACAGGGCGA 24163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120456604814224