Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_020205.1 Length=42963 Score E Sequences producing significant alignments: (Bits) Value seq27595 102 2e-17 >seq27595 Length=1905 Score = 102 bits (112), Expect = 2e-17 Identities = 212/312 (68%), Gaps = 18/312 (6%) Strand=Plus/Plus Query 35652 GGCAGGCCCGGCCAGTAGCTGCGGAAGTCGCACCACTGCCGGCCGGACACCAGCAGCTGC 35711 |||| |||||||||||||||| ||||||| ||||| || |||| ||| || || Sbjct 1106 GGCATGCCCGGCCAGTAGCTGATGAAGTCGATCCACTCGCGCTCGGATACC--CATAGGC 1163 Query 35712 C--CCTGGACCTGGGCCACGTGTTCGCTGGGGAGCTTGCCGGCCAGCACGGCTTCGATCT 35769 | ||||| |||||| | |||||| |||||| || |||||| || | | ||| || Sbjct 1164 CGGCCTGGCACTGGGCGATGTGTTCCTTGGGGATCTCGCCGGCGAGGATCACACCGACCT 1223 Query 35770 GCAGGTGCGGCAGCTTGGTTTTGATTTCCAGCAGGCCGTCGTCGCCCACCAGGGTGTCCG 35829 | | | |||||||| | ||||| || | ||||||||| ||| | || | ||| | Sbjct 1224 GAAACTTGGGCAGCTTCGACTTGATCTCGACCAGGCCGTCAGTGCCGATCAAGCCGTCAG 1283 Query 35830 GGCTGCAGCCGATCCGGCCGCGGCGCATGAACCCGACCTGG------CGGCATTCGT-GG 35882 | | ||||||| | | | | |||| |||||||||| |||||||| | || Sbjct 1284 GCGAGTAGCCGATACCATGGTTGAGGATGATCCCGACCTGGTCGGTCCGGCATTCCTCGG 1343 Query 35883 TCGCTGGTGGCCATGTAGAGGTCGCGCACCTGTGGTTCCATCACGTGCCCGCGCTCGGTG 35942 | ||| || ||||| | ||| || | |||||| | || ||||| |||||| Sbjct 1344 TGTCTG-----CA--TAGAGCTTGCGGGCCACCAGCTCCATCTCATGGCCGCGTTCGGTG 1396 Query 35943 TGCTTGTTGCCG 35954 || ||||||| Sbjct 1397 TGGCGGTTGCCG 1408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137143911772600