Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq60391 109 1e-19 seq75625 86.0 2e-12 >seq60391 Length=4507 Score = 109 bits (120), Expect = 1e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 24123 CGGGAGCCACTCACCCCACTGTTTGTGGTGGAACGCCACGCCA-GCGCTTACGCACTGGT 24181 ||| |||||||| ||||| || ||| | ||| |||||||| | ||| ||||||||| Sbjct 4094 CGGCAGCCACTCCCCCCATTGCTTGAAGAAGAAGGCCACGCCCTGTGCTG-CGCACTGGT 4152 Query 24182 CGCGCAGGCTGCGGACCCAATCCGGGTGCATGGGCCGGGCGCGCGGGCCGCTCTCGCCGC 24241 | |||| || ||||| | |||| || || ||||||||||| ||||||||||||| Sbjct 4153 CACGCATAGACCGCACCCACGCGGGGTTCAGTGGGCGGGCGCGCGGCCCGCTCTCGCCGC 4212 Query 24242 CGACGATCACGAGGTCGAGGCC 24263 ||||||||||||||| || ||| Sbjct 4213 CGACGATCACGAGGTGGATGCC 4234 >seq75625 Length=8981 Score = 86.0 bits (94), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 35178 TGGCCGTGGCATTCCAGCTGGTGGAAGCCAAGCGGTAATCGCCGCAATCTCGTCAAGGCC 35237 ||||| ||| || || ||||||||||| | | ||||||| | ||||| |||||| Sbjct 6031 TGGCCTTGGGATCTGAGATGGTGGAAGCCGACTGACCGTCGCCGCGACCTCGTGAAGGCC 5972 Query 35238 GCTGCTCTGATCTTGGCCGAGATCGAGCGGCTAGACCGCGCCGCTGC 35284 | || |||||| | |||||||||||||| || || ||||||||||| Sbjct 5971 GGAGCGCTGATCCTCGCCGAGATCGAGCGACTGGATCGCGCCGCTGC 5925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129239566106312