Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_020840.1 Length=38987 Score E Sequences producing significant alignments: (Bits) Value seq62642 89.7 1e-13 >seq62642 Length=4899 Score = 89.7 bits (98), Expect = 1e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11904 CTCGAGCGCGTAGACTGGGTCATCTGTGGTGGCGAGAGCGGCGATGGCGCCCGGCCGATG 11963 ||||| || | |||||||||||| ||||||||||| ||| ||||| | |||||| Sbjct 4818 CTCGAAGGCATCGACTGGGTCATCGTCGGTGGCGAGAGTGGCCCCCGCGCCAGACCGATG 4759 Query 11964 CACCCAGAGTGGGCCAGGCAGGTGCGTGACCAGTGCGCGGCCGCTGATGTGCCGTTCCTG 12023 |||| ||||||| | || |||| | ||||| |||| | || | |||| | ||| | Sbjct 4758 GACCCGGAGTGGGTCCGGGAGGTCAGGGACCAATGCGTCGTGGCCGGTGTGGCCTTCTTC 4699 Query 12024 TTTAAGCAATGGGG 12037 || ||||||||||| Sbjct 4698 TTCAAGCAATGGGG 4685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124440727306488