Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq128333 100 1e-16 >seq128333 Length=65618 Score = 100 bits (110), Expect = 1e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26056 AGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAA 26115 || ||| ||||||| || || ||||| |||||||| || || | ||||| |||||||| Sbjct 22578 AGAAAAGGTACCTTTCCTCTTCCCTCCCCCTTGATCAACATAACGAGCAGTGTCATTGAA 22637 Query 26116 AACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCC 26175 |||| | ||| ||||| | ||| |||| ||| ||||| | | |||| | || Sbjct 22638 AACTCGTACCATAGGAACAATGCCATTTGATGTTCCATTTGTCCCACGAATATAACTCCC 22697 Query 26176 TGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGC 26235 || | | ||| | |||| | || ||| ||||| ||||| |||| ||| | || Sbjct 22698 CGTAGCACGAATGTTGTGAACTGAAACACCAATTCCTCCAGCTGATTTGCTGATAACAGC 22757 Query 26236 ACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||| ||| | |||||| | || |||| ||||||||| ||||||| Sbjct 22758 ACACTCTTTCAAGGTATCGTATATGCCTTCAATGCTATCATCTTTCAT 22805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252631453951700