Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq75625 156 1e-33 >seq75625 Length=8981 Score = 156 bits (172), Expect = 1e-33 Identities = 130/159 (82%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 2430 CTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTGCAGCGGTCGCGCACGCTCTCCGG 2489 ||| || |||||||| | ||||||||||||||| ||||| ||||| | ||||||||| Sbjct 8567 CTTCGAGAGCAGGAACAGGTACTCGTGCGCCTTCGTGCAACGGTCCTCGATGCTCTCCGG 8626 Query 2490 CATTGGGTTTGGCTTGTGCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCTTGCAG 2549 ||| ||||| ||||| |||||| || ||||| ||||| |||||||||| || ||||| Sbjct 8627 CATCGGGTTGGGCTTCGACCAGATGATGTCCTGGCGCAGCCACCAGCCGTCTGCCTGCAG 8686 Query 2550 GGCGAACGCTACGCGCCAGGGGATGCCGATAAGGTCTTT 2588 ||||| || |||||||| ||||||||||| ||||| || Sbjct 8687 CGCGAAGGCGACGCGCCACGGGATGCCGATCAGGTCCTT 8725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129897729084184