Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq101633 114 2e-20 seq124973 100 3e-16 seq26752 98.7 1e-15 seq128333 89.7 6e-13 seq109206 89.7 6e-13 >seq101633 Length=21634 Score = 114 bits (126), Expect = 2e-20 Identities = 228/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || || ||| || || |||||| | ||| ||||| Sbjct 10635 CCTGGAACTGGAAAGACTCTGCTAGCTAAAGCAATTGCTGGTGAAGCTGGTGTTCCATTT 10694 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || ||||||||||| || ||||| | || Sbjct 10695 TTCTCCATCTCGGGTTCTGAGTTTGTTGAAATGTTTGTTGGAGTTGGTGCTTCTCGAGTA 10754 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || ||| ||| || ||| ||| || ||||| || ||||||| ||| Sbjct 10755 CGTGATCTTTTCAAAAAGGCCAAGGAGAATGCACCTTGCATTGTATTTGTTGATGAAATT 10814 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTAT---GCCAGCAAATGACGAGAGAGAA 175551 ||||| ||||| ||| || || | | ||| || | || |||||| || |||||| Sbjct 10815 GATGCTGTGGG-AAG--ACAGAGAGGTACTGGAATTGGGGGAGGAAATGATGAAAGAGAA 10871 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 || || |||| || || | || || |||||||| ||||| | | || ||||| | Sbjct 10872 CAGACCCTTAACCAGCTTTTAACAGAAATGGATGGTTTTGAAGGTAACACCGGCATCATT 10931 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 |||||||| |||||||| | | || || ||||| Sbjct 10932 GTTATTGCTGCCACTAACAGAGCTGACATTCTTGA 10966 >seq124973 Length=53790 Score = 100 bits (110), Expect = 3e-16 Identities = 190/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| ||||||||||| | || ||||| | || |||||| | || || || Sbjct 43622 CCTGGTACTGGAAAGACCCTTTTGGCTCGAGCAGTGGCTGGTGAAGCTGGCGTGCCGTTT 43563 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | |||||||| |||||||||| || ||||| | || Sbjct 43562 TTCTCTTGTGCAGCTTCAGAGTTTGTGGAATTGTTTGTTGGAGTTGGTGCGTCTCGAGTC 43503 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||| | ||||| | ||| | |||| || || || ||||| || || ||||| || Sbjct 43502 CGGGATTTGTTTGAGAAGGCCAAGTCAAAAGCACCC-TGCATTGTGTTTATAGATGAAAT 43444 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| || || | ||| | | |||||| | | ||||| |||||||| || Sbjct 43443 TGATGCAGTTGGGAGACAAAGAGGGGCTGGTCTTGGAGGTGGGAATGATGAGAGAGAGCA 43384 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || ||||| || ||| | || ||||||||||| ||| Sbjct 43383 GACCATTAACCAGCTATTGACAGAGATGGATGGGTTT 43347 >seq26752 Length=1779 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| ||||||| || || ||||||||||||| || ||||| || | | Sbjct 389 CCACAGCACATGATCATGCGTGTTGCTGTCGGCATCCACGGCGACGACATCGAGGCCGCA 330 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||||| | | ||| |||| || || | || || ||||| Sbjct 329 ATCGAGACCTACAACTACATGTCCAACAAGTA-CTTCACACATGCCTCCCCTACGCTCTT 271 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || || ||||| || | ||| || | ||||||||| |||| || ||||| || Sbjct 270 CAGCGCAGGTACCCCTCAGGCACAGCTGGCGTCTTGCTTCCTCATCGACATGAAGGATGA 211 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCT 75448 | || | |||||||| | ||||| | | | ||||| | ||||| ||| ||| Sbjct 210 CAGCATTGAGGGTATCTACGATACTCTCAAG--ATCTGCGCCATGATCTCCAAGAACGCT 153 Query 75449 GGGGGTATTGG 75459 || |||||||| Sbjct 152 GGTGGTATTGG 142 >seq128333 Length=65618 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 || || | ||| | || ||| ||||| ||||||||||||||| | || |||| || Sbjct 23165 CGTGATTTTGACTATGATTATTTTGGCTTCAAAACCCTTGAGAGGTCATACCTCTTGAAG 23106 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | | | || | | || |||| || || ||||||| ||| |||| || | || | Sbjct 23105 G--TACAAGGAAAAGTTATTGAAAGACCGCAACACATGTTGATGAGGGTTGCTGTTGGAA 23048 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| ||| || |||| |||| | ||||||| ||| |||||| || | || Sbjct 23047 TTCACAAGGAGGATGTTGAATCTGCTATCAAGACATATCACATGATGTCTCAGCGGTGGT 22988 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| ||| || | || |||||||||||| |||| |||||||| || ||| Sbjct 22987 TCACTCATGCTTCTCCCACCCTCTTCAATTCTGGAACACCAAGGCCTCAG 22938 >seq109206 Length=27697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/256 (68%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 64957 TACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGT 65016 |||||||| || |||| ||||| | | ||| | |||||| | || | || ||| Sbjct 8280 TACATTAAAGACCCGGCTGAGAAGAACCGCCTCTTTCACGCCATCGAGACCATTCCTTGT 8221 Query 65017 ATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCG 65074 | | |||||||| | ||||| |||| ||| | ||| | ||| || |||| Sbjct 8220 GTGGCCAAGAAGGCTCAGTGGGCCATGAGGTGGATCGAC-----GGCTCAGAATCTTTCG 8166 Query 65075 CCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG 65134 | ||||| | | ||||| || || || ||||| |||||||||||||| ||||||| Sbjct 8165 CGGAGCGGTTGATCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCG 8106 Query 65135 CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTA 65194 | || | |||| | ||||| || || | ||||| || || ||||| || || | | Sbjct 8105 CGATATTTTGGCTAAAGAAACGCGGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGA 8046 Query 65195 TTTCCCGAGATGAGGG 65210 | || |||||||| || Sbjct 8045 TATCGCGAGATGAAGG 8030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595581710570880