Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq115941 98.7 2e-15 seq113932 93.3 8e-14 seq106905 93.3 8e-14 seq97232 93.3 8e-14 seq86460 93.3 8e-14 seq109654 87.8 3e-12 seq64237 87.8 3e-12 >seq115941 Length=36387 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | ||||| || ||||| | || | ||| || || || Sbjct 4884 AATTTGCATTCCACCACGGAGACGAAGCACTAGATGGAGAGTGGACTCCTTTTGTATGTT 4943 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | || || || || | ||| ||||||||||| || | |||||| || Sbjct 4944 GTAATCGGCAAGTGTCCTTCCGTCCTCGAGTTGCTTTCCGGCAAAGATAAGTCTCTGCTG 5003 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || |||||||| || || | || | ||| |||||||||||| Sbjct 5004 GTCTGGTGGGATACCCTCCTTATCTTGGATCTTTGCCTTGACATTGTCAATAGTATCGGA 5063 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||||| ||||| || || || || || ||||| || ||||| Sbjct 5064 GCTCTCAACCTCCAATGTTATTGTTTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 5120 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || ||||||| ||| | || | || || |||||| Sbjct 5569 ATTTGCATACCGCCACGAAGACGGAGTACCAAATGGAGGGTCGATTCCTTTTGGATATTA 5628 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | | || || | || ||||| || ||||| | ||||| ||| Sbjct 5629 TAGTCGGCCAGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATCAGCCTCTGCTGA 5688 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| || || | || | ||| || ||||| ||| Sbjct 5689 TCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCTATGGTATCCGAA 5748 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || |||||||| || || ||||| ||||| ||||| || || |||||||| Sbjct 5749 CTCTCGACCTCTAGAGTGATGGTCTTACCGGTTAGGGTTTTCACGAAGATTTGCAT 5804 >seq113932 Length=32622 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | | ||| || || || || || || || || || || || Sbjct 19478 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATC 19419 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || ||||||||||| ||||| ||||| |||||||| Sbjct 19418 TTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCAACCTCTAGGGTTATGGTTTTACCC 19359 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 19358 GTTAGGGTTTTCACGAAGATCTGCAT 19333 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | | ||| || || || || || || || || || || || Sbjct 27559 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATC 27500 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct 27499 TTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTTACCC 27440 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 27439 GTTAGGGTTTTCACGAAGATCTGCAT 27414 >seq106905 Length=25706 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | | ||| || || || || || || || || || || || Sbjct 9469 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATC 9410 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct 9409 TTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTTACCC 9350 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 9349 GTTAGGGTTTTCACGAAGATCTGCAT 9324 >seq97232 Length=18783 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | | ||| || || || || || || || || || || || Sbjct 12369 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATC 12428 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct 12429 TTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTTACCC 12488 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 12489 GTTAGGGTTTTCACGAAGATCTGCAT 12514 >seq86460 Length=13305 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | | ||| || || || || || || || || || || || Sbjct 12005 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATC 11946 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct 11945 TTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTTACCC 11886 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 11885 GTTAGGGTTTTCACGAAGATCTGCAT 11860 >seq109654 Length=28343 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || ||||| ||||| ||||| || ||||| || || ||||| Sbjct 18959 TGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGTATC 19018 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | || ||| |||||||| ||||| || || ||||| || || || || Sbjct 19019 TTAGCCTTGACGTTGTCAATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTTCCG 19078 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || || || || ||||| Sbjct 19079 GTCAAGGTCTTGACGAAGATCTGCAT 19104 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | | || |||||||| | || | ||| || ||| || |||||| Sbjct 18647 ATACCACCACGGAGCCTTAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCG 18706 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | || ||||||||||| || || ||||| || || || Sbjct 18707 GCGAGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 18766 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || |||| ||| | || || || ||||| || || Sbjct 18767 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGATGATTCG 18826 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || | || || || || || ||||| Sbjct 18827 ACTTCGAGCGTGATCGTCTTTCCGGTCAAAGTCTTAACGAAGATCTGCAT 18876 >seq64237 Length=5233 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | | ||| || || || || || || || || || || || Sbjct 3171 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATC 3230 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || ||||||||||| ||||| ||||| |||||||| Sbjct 3231 TTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATGGTTTTACCC 3290 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 3291 GTTAGGGTTTTCACGAAGATCTGCAT 3316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898164617296320