Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq109206 109 8e-19 seq86116 107 3e-18 seq109654 95.1 2e-14 >seq109206 Length=27697 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 |||||||| ||||| |||||| |||||||||| ||||| || |||||| ||||| Sbjct 8006 AAACACGCGAAATCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGTG 8065 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| | || | ||| |||||||||||||||| ||| || | || ||| Sbjct 8066 AGACCCGGCATCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAG 8125 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 || || ||||| ||||| |||||||| || || | || || ||| Sbjct 8126 AAGATCCCCTCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAA 8170 >seq86116 Length=13258 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| ||||| || ||||||||| ||| Sbjct 3161 ATGCAAATTTTTGTGAAGACCCTTACCGGGAAAACCATTACTTTGGAAGTCGAAAGTTCC 3102 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || || || || || || || || || || || Sbjct 3101 GATACAATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 3042 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || ||||||||||| ||| |||| || | || ||||| Sbjct 3041 CAAAGGCTCATTTTTGCTGGCAAGCAGCTCGAGGATGGACGAACCTTGGCCGACTATAAC 2982 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| ||||| || ||||| Sbjct 2981 ATCCAGAAGGAGTCGACCCTTCACTTGGTGTT 2950 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||||||||| || || || || |||||| || Sbjct 3617 ATGCAAATCTTTGTCAAAACCCTTACTGGAAAAACCATCACCTTGGAGGTCGAAAGCTCC 3558 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 3557 GACACAATTGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAG 3498 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| || || |||||||| || || | | ||| | | ||||| || Sbjct 3497 CAGAGATTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACTCTTGCCGATTACAAC 3438 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| || || Sbjct 3437 ATCCAGAAAGAATCCACCCTTCACTTGGT 3409 >seq109654 Length=28343 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| ||||| || || || | || ||||| || Sbjct 19104 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTCGAGTCCTCC 19045 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||| ||||| || || |||||||| ||||| || || Sbjct 19044 GATACCATTGACAACGTCAAGGCTAAGATACAGGACAAGGAAGGCATTCCTCCGGATCAG 18985 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| ||| | |||| | | ||||| || Sbjct 18984 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCCGATTACAAC 18925 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || ||||| || ||| Sbjct 18924 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 18895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730660056561600