Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq86116 91.5 3e-13 >seq86116 Length=13258 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || || || | || | ||| || ||| ||||| || Sbjct 2932 ATCCCACCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCG 2991 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || |||||| |||| || | || || |||||||| || | || || || ||||| Sbjct 2992 GCCAAGGTTCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATGAGCCTTTGCTGGTCAGGC 3051 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || ||| ||| ||||| || | ||| || ||| Sbjct 3052 GGGATACCCTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATTGTATCGGAACTTTCG 3111 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||||||| || || | || || | ||| || ||||| Sbjct 3112 ACTTCCAAAGTAATGGTTTTCCCGGTAAGGGTCTTCACAAAAATTTGCAT 3161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982808994102600