Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq115941 93.3 8e-14 >seq115941 Length=36387 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || ||||||||||| || ||||||||||| || || ||||| || || Sbjct 4738 TCCTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGGGAATTCCCTCCTTG 4797 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| |||||||| || ||||| || || || || || || ||| Sbjct 4798 TCTTGAATTTTCGCCTTTACATTGTCAATTGTATCAGAGCTCTCGACCTCGAGGGTGATG 4857 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || | || || | || || |||||| Sbjct 4858 GTTTTTCCCGTAAGGGTCTTCACAAAAATTTGCATT 4893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903637140040800