Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq28094 149 2e-30 seq101633 114 4e-20 seq114615 113 1e-19 seq115827 105 2e-17 seq124550 102 2e-16 seq124973 98.7 3e-15 seq26752 93.3 1e-13 seq109206 91.5 4e-13 seq103831 87.8 5e-12 >seq28094 Length=1997 Score = 149 bits (164), Expect = 2e-30 Identities = 211/294 (72%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| ||||| | ||||||||||||||||||||| | || || ||||| Sbjct 1561 TCTTCCAAGGCCTTGACAAGACGACGCTGAATATAACCAGTCTCGGCAGTCTTGACAGCA 1502 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 || ||||| ||||| ||||||||||||| || |||||||| | ||| | || || || Sbjct 1501 GTGTCAATGAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTC-GCTGGGAGTAAG 1443 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | | ||| |||| ||||||||||| || ||||| || | ||| |||||| Sbjct 1442 ACCACGGAGATAAGAGTTCTCGACGAAACCACGAGCTTCGGGTGAGTAATCGTCCTTGGT 1383 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || ||||| || | || || | ||| | || ||||||||||| ||||| | || Sbjct 1382 GAAATGGGGCAGAGTACGGTACTTGAAACCGAAAGGAATACGCTTTCCTTCAACAATTTG 1323 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||| || | || | ||||||| ||||| || | | | |||||||| || Sbjct 1322 CTGACCAACAAGCGCAGTCATCTGTGAAATGTTGATAGAAGAACCCTTGGAACC 1269 >seq101633 Length=21634 Score = 114 bits (126), Expect = 4e-20 Identities = 273/403 (68%), Gaps = 16/403 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||||||||| |||| | ||| || | ||| | || || |||||||| || || Sbjct 10999 CTATCAAACCTCCCAGGCCTTAATAAAGCAGAGTCAAGAATGTCAGCTCTGTTAGTGGCA 10940 Query 288910 GCCAATACAACAATAGATTCGG---TTTGCTT-AAATCCATCCATACTTGTTAAAATTTG 288965 || |||| ||||| ||| | | || ||| ||| |||||||| |||||||| || Sbjct 10939 GC-AATA--ACAAT-GATGCCGGTGTTACCTTCAAAACCATCCATTTCTGTTAAAAGCTG 10884 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 ||||| || ||||| |||||||||||| |||| | || | | | ||| | Sbjct 10883 GTTAAGGGTCTGTTCTCTTTCATCATTT---CCTCCCCCAATTCCAGTACCTCTC---TG 10830 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 | | || |||||||||||||| |||| || | | || || | ||| | | || | Sbjct 10829 TCTTCCCACAGCATCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGCCTT 10770 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 | || | || | ||| || || || |||| |||||| ||||||| ||||| ||||| Sbjct 10769 TTTGAAAAGATCACGTACTCGAGAAGCACCAACTCCAACAAACATTTCAACAAACTCAGA 10710 Query 289146 AGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | || | | || | |||| ||| ||||| || || | ||| | || || || | Sbjct 10709 ACCCGAGA-TGGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCTTTAGCTAGCAGAG 10651 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 |||| || |||||||| || || | | |||||||| || || Sbjct 10650 TCTTTCCAGTTCCAGGGGGGCCAACAAGAAGAACTCCTTTAGG 10608 >seq114615 Length=33520 Score = 113 bits (124), Expect = 1e-19 Identities = 222/326 (68%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||||||||||||||| || |||||||| | || ||| || ||||| | | || | Sbjct 31762 TACCAACAGCATCAATCTCATCAATGAACACCAAACATGGCGAATTCGCTTTTGCCTTGT 31821 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || | || || || | || || |||| || ||| |||| || | || || || Sbjct 31822 TGAACAGGTCCCTCACTCTCGAAGCCCCAACTCCCACAAACATCTCGATGAACTCCGATC 31881 Query 289148 CGGATA-CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | | ||| ||| | ||| || || ||||| | ||| | || || | |||| Sbjct 31882 CCGAAAGCGAGAA-GAAAGGCACACCGGCCTCCCCTGCAATGGCCTTGGCAAGCAATGTC 31940 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || || |||||||| || || |||| |||||||| || || | || |||||| ||| Sbjct 31941 TTCCCGGTTCCAGGGGGGCCTACTAAGAGAACTCCTTTCGGAATCTTAGCCCCAACAGCA 32000 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | | || || || ||||||| || ||||| || || | || || | ||||| || Sbjct 32001 GCAAACTTTTCTGGCGTCTTTAAGAACTCTACTATCTCTTGAAAATCTTGCTTTGCTTCG 32060 Query 289327 TCACATCCTGCTACATCAGCAAAAGT 289352 ||| ||| ||||||||| |||| || Sbjct 32061 TCAACTCCAGCTACATCATCAAATGT 32086 >seq115827 Length=34973 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||| ||| ||||| ||||| | | || ||| || || || | | Sbjct 14218 CCAACTGCATCAAGTTCATCAATAAAAATAATTGAAGGGGAAGATTTCCTTGCCACAAGA 14159 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||| | || | ||| || |||||| ||||||| ||||||||| ||| Sbjct 14158 AAAAGGTCTCTAATGCGAGCTGCCCCTCTTCCAACAAACATTTCCACAAATTCACTAGCA 14099 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || || |||| |||| ||| || || || ||||||| ||||| | ||| ||| Sbjct 14098 GAAACAGTAAAAAATGGTACACCTGCCTCTCCAGCCACTGCCCGGGCCAGCAATGTTTTA 14039 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 |||||||| || || ||| | | || ||| || | |||| |||||| ||| Sbjct 14038 CCTGTTCCTGGAGGACCCACCAGTAAAACACCTCTGGGTAATTTTGCTCCA 13988 >seq124550 Length=51096 Score = 102 bits (112), Expect = 2e-16 Identities = 215/317 (68%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| |||||||| ||| | || | | ||| || || ||||| ||| || || Sbjct 41452 CATAATATCTTCCATGGCCTTAACTAGTCTCCTCTGGATGTACCCAGTCTCAGAAGTCTT 41511 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || ||||| || ||||| | | |||||||||||||||||| || | ||| | || Sbjct 41512 CACTGCAGTATCTATAAGACCTTCTCTACCACCCATAGCATGGAAAAAGAACTCCTGTGG 41571 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGC---GAATCGTC 302741 | || || | | | | || | ||||| || ||||| || ||| |||| || Sbjct 41572 TGTCAGTCCTCGTAAATATGAATTTTCAACAAAGCCACGACTTTCTGGCCCGTAATCATC 41631 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCAT 302800 || || ||||| |||| |||| | ||| | | || || || || ||||| || | Sbjct 41632 ---TTTAGTGAAGTGCGGCAATGTCC-GATCTATAAACCCATAAGGTATTCGCTTGCCCT 41687 Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGG 302860 |||| || ||||| |||| || | | ||||||| || || || | | ||| || || | Sbjct 41688 CAACATTTTGCTGCCCCACACAAGCAGTCATCTGTGAGATGTTAATAAAACTTCCTTTAG 41747 Query 302861 AGCCAGCATTTACCATA 302877 | || ||| | |||||| Sbjct 41748 ACCCTGCAGTAACCATA 41764 Score = 95.1 bits (104), Expect = 4e-14 Identities = 112/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 301815 AATTTCT-TCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 ||||||| |||| | |||||||||| | || || || ||| || || |||||||| Sbjct 40684 AATTTCTCTCAAC-CTGGGAACACCAAGAGTGACATTCT--TTGCACTCA-CACCAGCAT 40739 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 | ||||| ||||| ||||| | ||||| | |||||||||||| |||||| || | Sbjct 40740 AATGGAAGGTATTGAGAGTCATCTGAGTTGCAGGCTCACCAATAGATTGTGCAGCCACAC 40799 Query 301934 TACCAACCATTTCTCCTGGTGCTACAA 301960 ||||| ||||||||| |||||||||| Sbjct 40800 AACCAATCATTTCTCCAGGTGCTACAA 40826 >seq124973 Length=53790 Score = 98.7 bits (108), Expect = 3e-15 Identities = 279/421 (66%), Gaps = 16/421 (4%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| ||| || | || |||| || || || || |||||||| ||| Sbjct 43347 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 43406 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | || || ||| ||| | | ||||| ||||||||||| || || || | Sbjct 43407 TCCAAGACCAGCCC-----CTC-TTTGTCTCCCAACTGCATCAATTTCATCTATAAACAC 43460 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTG-CAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || || | ||||| || | || |||| || || | || || || || |||| Sbjct 43461 AATGCAGGGTGC-TTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCGAGACGCACCAA 43519 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 |||||| ||| ||| ||||| || ||||| | || || | || | || ||| Sbjct 43520 CTCCAACAAACAATTCCACAAACTCTGAAGCTGC-ACAAGAGAAAAACGGCACGCCAGCT 43578 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || ||||| | |||| ||| ||||| || || ||||||||||| | | ||| Sbjct 43579 TCACCAGCCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAACAAGAAGA 43638 Query 289237 ACTCCCTTTGGTACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 |||||||| | || || ||| |||| | || || || ||| |||| || || Sbjct 43639 CACCCCTTTGGGATCTTAGCTCCAAGTGCAG---TGTACTTATCTGGGTTCTTCAAGAAA 43695 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTA 289353 || || | || | | |||| |||||| | || ||| || ||||||| ||||||| Sbjct 43696 TCAACCACCTCTTGCAATTCAAGTTTTGCTTGGTCTGCTCCAGCAACATCAGAAAAAGTA 43755 Query 289354 A 289354 | Sbjct 43756 A 43756 >seq26752 Length=1779 Score = 93.3 bits (102), Expect = 1e-13 Identities = 288/442 (65%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 ||||| ||||| || || || ||||| || || ||| |||||| ||||| || | | | Sbjct 16 TTGCCTCCCTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACACGAAGCATGGGCACGAGA 75 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || ||||||||||||||||| || | ||| | | |||| | |||| ||| | Sbjct 76 CCGTTGGAAGTGCCATTGGTGCCACCAATGTAAGCGCCAGTGGCACGAATGCGGTGAGTG 135 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | || ||||||||||| | || || || ||||| ||| | ||||| | | Sbjct 136 TTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATCTTGAGAGTATCGTAG 195 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||| ||||| ||||| | ||| | || |||| || | || | | Sbjct 196 ATACCCTCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGCTGTGCCTGA 255 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 || || || ||| |||| || ||||| | ||||| | || ||||| || ||||| || Sbjct 256 GGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTGAAGTACTTGTTGGACATGTAG 315 Query 156360 TCGTATGTCTCCTTAATCTTCTCAAGAT-TAGAC-CCGTGAATACAGATAGAGACCCTCA 156417 | ||| ||||| | ||| ||| | | | ||||| || | || || || | || Sbjct 316 TTGTAGGTCTCGATTGCGGCCTC--GATGTCGTCGCCGTGGATGCCGACAGCAACACGCA 373 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 | ||| ||||| || | ||| ||| || ||||| || ||||| |||| ||| | Sbjct 374 TGATCATGTGCTGTGGTCTCTCGGCAACTTTGCCGTCAATGCGGAGAAGATATGAGCGCT 433 Query 156478 CCAGAGTTTTAAACCCGAAATA 156499 | || || || || || || || Sbjct 434 CGAGCGTCTTGAAGCCAAAGTA 455 >seq109206 Length=27697 Score = 91.5 bits (100), Expect = 4e-13 Identities = 275/415 (66%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 133071 ATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGC 133130 ||||||| ||||||||| ||| || || ||||||||| ||||||| || || Sbjct 8594 ATAGGTTCTGTATGTTCCCGATTCAGTACCCGGAGATTTGGGAGATGTACAAGAAGGCCG 8535 Query 133131 AAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAG 133190 | | | || ||||| | || || ||| | ||| ||||| |||| ||||| Sbjct 8534 AGGCCTCGTTCTGGACGGCGGAGGAGGTGGATCTCTCCCAAGACAATACCCAATGGGAGA 8475 Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGT 133249 | | ||| ||||| || || || ||||| ||| | || || || ||||| || Sbjct 8474 ACATGACTCCCGATGAGAAGCACTTCATTTCCCATGTTCTT-GCTTTCTTTGCCGCCTCA 8416 Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG--GGAGAAGTTCAACTGGCCG 133307 || || || ||| | || ||| | | | |||| ||| ||||| ||||| | || | Sbjct 8415 GACGGCATCGTTTTGGAGAATCTCGCCGGAAGGTTCATGAAGGAGA--TTCAAGTCGCGG 8358 Query 133308 AAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATT 133367 | || ||||||||||||||| | ||||| || || || ||||| || ||| | || Sbjct 8357 AGGCGCGTGCCTTTTATGGGTTCCAGATCGCTATCGAGAATATTCACTCTGAGATGTACA 8298 Query 133368 CTACTCTAATT-GATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCC 133426 | |||| || || |||||||| ||||| | | ||||| || || || ||||| Sbjct 8297 GT-CTCTTGTTGGAGACTTACATTAAAGACCCGGCTGAGAAGAACCGCCTCTTTCACGCC 8239 Query 133427 ATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATC 133480 | | | || |||||||| | ||||| || | ||||| || | |||||| Sbjct 8238 A-TCGAGACCATTCCTTGTGTGGCCAAGAAGGCTCAGTGGGCCATGAGGTGGATC 8185 >seq103831 Length=23175 Score = 87.8 bits (96), Expect = 5e-12 Identities = 213/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| || || || || | | || |||| | || || || || | Sbjct 7121 ACCAATTGCATCAATCTCATCGATAAATACTATACTTGGAGCACACTGCCTTGC--TTCC 7064 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||| | || || | ||||| |||| |||||| |||| || | ||| |||||| Sbjct 7063 TGAAATAAGTTCCTAACCCTGGATGGCCCAACCCCAACAAACATCTCCATAAAATCAGAA 7004 Query 289147 GCGGATACTTGAATGAATGT-TACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | | | ||||| ||| | ||| || ||| ||||| ||| | || ||||| || Sbjct 7003 CCAGCAA-TTGAAAGAAAGGGTACCCCTGATTCTCCTGCAGTTGCTTTAGCTAGAAGGGT 6945 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||| |||||||| || || || | || || |||| || || | ||| || || Sbjct 6944 CTTTCCTGTTCCTGGAGGGCCTACCAACAGTGCTCCTTTAGGAATTTTGGCTCCCAATTC 6885 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || |||||||| || | |||| || | |||| ||| | ||| | |||||||| Sbjct 6884 CTCATATTTCTTTGGATTTTTTAGGAAATGCACAAACTCCATTATTTCTTGCTTTGCCTC 6825 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || || ||||| Sbjct 6824 ATCACAACCAGCAACATC 6807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469319412236412