Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021561.1 Length=37324 Score E Sequences producing significant alignments: (Bits) Value seq124742 176 1e-39 >seq124742 Length=51505 Score = 176 bits (194), Expect = 1e-39 Identities = 619/957 (65%), Gaps = 21/957 (2%) Strand=Plus/Plus Query 31864 ATGGCTACTACAGTAAACTCTGATTTAGTAATCTACAATGACACGGCCCAGACTGCGTAC 31923 ||||||||||| || ||| || | | ||||| || || ||| || ||||| ||| Sbjct 17198 ATGGCTACTACCGTTAACAGCGACCTGATCATCTATAACGATGAGGCGCAAACTGCATAC 17257 Query 31924 CTAGAGCGCAACATGGACAACCTAGCTGTGTTCAATGAAAACTCACGCGCTGCGATTGGC 31983 || ||||| | |||||||| | ||||||||| | | || || ||||| | Sbjct 17258 CTGGAGCGTGTCCAAGACAACCTGGATGTGTTCAACGCATCGTCCAACGGCGCGATGGTT 17317 Query 31984 CTGAACTCTGAGCTAATCGAAGGTGACTTGAAGCTA-CGCTCGTTCTACAAAGTGGGCGG 32042 ||| || ||||| |||||||||||||| || | ||| | ||||||| || ||| Sbjct 17318 CTGGACAACGAGCTGATCGAAGGTGACTTCC-GCAAGCGCGCCCTCTACAAGCTGAACGG 17376 Query 32043 CTCTATCGCTGACCGTGATGTGAATTCA-ACGGCTACCGTTGCAGGTATTAAGATTGCAG 32101 ||| | | |||| || || || || | ||| | || | | | ||||| | Sbjct 17377 CTCGCTGGAGCACCGCGACGTCAACTCCGATGGCAAG-GTAACTGCCAAGAAGATCACCT 17435 Query 32102 CGGATGAAATGGTATCAGTGAAAGTGCCTTGGAAATACGGCCCATACGAAACCACAGAAG 32161 | | ||| || || || | || ||||| |||||||| ||| | ||||| |||| Sbjct 17436 CCGGCGAAGCCGTCGGCGTCAAGGCTCCCTGGAAGTACGGCCCGTACCAGACCACCGAAG 17495 Query 32162 AAGCGTTTAAGCGTCGCGCACGTTCGCCTGAGGAATTCTCTGAAATCATCGGTCAAGACA 32221 | ||||| ||||| |||| || || ||||| ||||| | ||| | || ||| Sbjct 17496 AGGCGTTCAAGCGCCGCGGTCGCCCGGTCGAGGAGTTCTCCCAGATCGTTGGCGCCGACG 17555 Query 32222 TGGCAGACGCTACAATGTCAGGTTGGATTGGTTACGCATTGAATGCACTACAAGGCGCAA 32281 | || ||||| || || ||| | || |||||| || || | | ||| | Sbjct 17556 TTGCTGACGCGACCCTGGAAGGCTTCATCCAGTACGCAACTGCTGGTCTGCGTGCCGCCA 17615 Query 32282 TCGGCTCTAACGCCGGCATGAACGTATCTGGCGAGCTTGCAACTGAAGGTAAGAAAGTTC 32341 ||||||| ||||||| |||| || || | | | | | ||| || || ||||| | Sbjct 17616 TCGGCTCCAACGCCGACATGGTGGTTTCGGCCAACATCGAAACCGACGGCAAGAAGACGC 17675 Query 32342 TTACCAAAGGTTTGCGCACAATGGGCGACAAAGCATCATCT--ATCGCAATCTGGGTGAT 32399 | ||| || |||||| | || ||||| || | || || | ||||| || Sbjct 17676 TGACCCGTGGCATGCGCAAGTTTGGTGACAAGT--TCGGCCGGATTGCGCTGTGGGTCAT 17733 Query 32400 GGATTCAACGTCTTACTTTGACATCGTTGACGAGGCGATTGACAACAAGCTTTATGAAGA 32459 | | || | | ||||| |||||||| ||||| || || ||||||| | || ||||| Sbjct 17734 GCACTCGTCCGCCTACTTCGACATCGTCGACGAAGCCATCACCAACAAGATCTACGAAGA 17793 Query 32460 AGCTGGTGTTGTGGTTTACGGTGGTACACCTGGCACGCTTGGTAAGCCTGTGCTTGTTAC 32519 ||||||||||||| | || || || || ||||| || || ||||| || || || || Sbjct 17794 AGCTGGTGTTGTGATCTATGGCGGCCTGCCGGGCACTCTGGGCAAGCCAGTACTGGTAAC 17853 Query 32520 TGACCAATGCCCAGCAACTAAGATTTTCGGTCTTGTAGCTGGCGCGGTAATGGTTACTGA 32579 ||| ||| || ||| ||||| || | | ||| |||| | || || Sbjct 17854 CGACACCGCCCCGGCGGACGTGATCTTCGGCCTGCTGCCAAACGCCGTAACCATCACCGA 17913 Query 32580 GTCTCAAGCGCCTGGTATGCGCTCTTACCAAATCGACGACCAAGAAAACTTGGCTATCGG 32639 ||| || || || || | || || ||| || | ||||| |||| |||||| ||||| Sbjct 17914 GTCGCAGGCCCCGGGCTTCCGTTCCTACGAAGTGAACGACGAAGAGAACTTGAGCATCGG 17973 Query 32640 TTTCCGCGCTGAGGGCACAGCTAACGTTGAAGTACTTGGCTACAAATGGAAAGACA---- 32695 | ||| ||||| || || | ||| | || || || || |||| ||||||| || Sbjct 17974 CTACCGAGCTGAAGGTACCGTGAACATCGATGTGCTGGGTTACAGCTGGAAAGCCACCAC 18033 Query 32696 AGGCGATT----ACTAACCCTGGTGCTGCCGCCCTTGCTACCACAGCCAACTGGCAGAAG 32751 |||| || | ||||||| ||||||| ||| || | ||||||||| || Sbjct 18034 TGGCGGTTCCAACCCAACCCTG--GCTGCCG---TTGGCTCCGCTGCCAACTGGGTTAAA 18088 Query 32752 TACGCAACAAGCGACAAGGCAACAGCCGGCTTCATCATTACACTAACAACTACGCCT 32808 | || ||| |||||| || ||||| | || || || || || | |||||| Sbjct 18089 CATGCGGGCAGCAACAAGGTTACCGCCGGTGTGATGATCACGCTCACTGCAACGCCT 18145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119127498994832