Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021777.1 Length=43447 Score E Sequences producing significant alignments: (Bits) Value seq124742 96.9 1e-15 >seq124742 Length=51505 Score = 96.9 bits (106), Expect = 1e-15 Identities = 316/491 (64%), Gaps = 24/491 (5%) Strand=Plus/Plus Query 873 GGAACTGTTATCTGCCGCTCGATGGATAACCCTGGTTCGATTGTGGGTTTCAAAATCGCC 932 || ||||| || ||||| |||||||| || || ||||||| |||||||| |||| | Sbjct 12450 GGCACTGTGATTTGCCGGTCGATGGAGAAGCCGCAGACGATTGTCGGTTTCAAGATCGGC 12509 Query 933 GCAGCGTGCGTGGATGAGCTCGATGTATTGAGTCGTGAGAAAGCTGAGCTGGCGTGGAAC 992 || ||||||||||| || || ||| | || || ||| ||| ||| | Sbjct 12510 CATGCCCTGGTGGATGAGCTGGACGTGCTGACTGCCATCAAGGCACAGCAGGCCTGGCGC 12569 Query 993 AAAATCGTAGCCCGTATGCGTCTGGTTATTCCGGGGGTAACCAACCACATCTCTGTAACC 1052 || ||| | ||||| ||||| | || ||| | | ||| | || || Sbjct 12570 AAGATCATTGCCCGGATGCGCTACAACCTGCCTGGGCTGAAGAACGGGGTGGACGTCACA 12629 Query 1053 ACGACGCCGGAAGGGTTCAAGTTCGTATACGCCAAGTTC--AAAG----------AGAAC 1100 |||||||||||||| ||||| || || | | | ||| |||| | || Sbjct 12630 ACGACGCCGGAAGGCTTCAAATTTGTCTTCCTGCAATTCGTAAAGCAGTTGCGCGACAAG 12689 Query 1101 CC------CACACCGAGTTACTCGATGGTGCAGGCATCGACCCACGAGAATGCGCAGTTC 1154 || || | || ||| | || |||||| || ||| || | || | | Sbjct 12690 CCTTCGCTCAAAGAGATGTACGGCTTAGTCCAGGCAAGCACGTTCGACAACGAGCTGAAC 12749 Query 1155 CTGCCGCCGGATTACATCAGCTCGCTGACCGAGACCTACCCGGCACAGTTGATTAACGCG 1214 |||||| || |||||| |||||||| ||| | || ||| | |||||||| | ||| Sbjct 12750 CTGCCGGATGACTACATCGCCTCGCTGATGGAGTCGTATCCGCCTCAGTTGATCATGGCG 12809 Query 1215 TATCTGAACGGCGAGTTCGTTAACCTGACATCCGGCAGCGTGTATTACGCATACGACCGC 1274 || || || ||| ||||||| |||||||| ||||||| | || ||| ||||||||| Sbjct 12810 TACCTCAAGGGCCAGTTCGTCAACCTGACGTCCGGCACGATCTACACCGCCTACGACCGC 12869 Query 1275 CGTAAGC---ACCGCAGCAAAGAGACAATTCAACCGGGTGACACGCTGTACATCGGGCAG 1331 |||| || | || || || | || || || || |||||| |||||| | Sbjct 12870 ---AAGCTAAACGGATGCTTCGACACCGTGCAGCCTGGCGAGCCGCTGTTCATCGGCATG 12926 Query 1332 GACTTCAACGT 1342 ||||||||||| Sbjct 12927 GACTTCAACGT 12937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138690275274008