Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq109206 170 2e-36 seq67444 154 2e-31 seq26752 134 2e-25 seq59678 131 2e-24 seq9444 113 5e-19 seq75625 104 3e-16 >seq109206 Length=27697 Score = 170 bits (188), Expect = 2e-36 Identities = 201/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || |||||||| ||||||||||| || |||||||| | | |||| || ||||| Sbjct 8309 GAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGCGACTTGA 8368 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | |||||||||||||| ||||| || ||||| ||||||||||| |||||| || Sbjct 8369 ATCTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGGCAAAG 8428 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || || || || ||||| ||| ||| | | | |||| ||| Sbjct 8429 AAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGTCATGTTCTCCCATTGGGTA 8488 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| | ||| ||||||||||| || ||||||| ||||||||||||||| |||||| Sbjct 8489 TTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTAC 8548 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||||| | | | |||| | || ||||| Sbjct 8549 ATCTCCCAAATCTCCGGGTACTGAATCGGGAA 8580 Score = 102 bits (112), Expect = 1e-15 Identities = 216/321 (67%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | ||| || ||||||||||| |||| | ||| ||| Sbjct 7715 GCCTTTTGGTACTCTCCAACCCTCTTCTCAAAGAAGTTGGTCTTACCCTGCAACGATATC 7774 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| || ||||| | | |||||| ||| || | || | || | Sbjct 7775 AGCTCCATCCAATCAAAGGGGTTCTGGGCATTGTAGATCTTGGCGTAACCCAACGCATCC 7834 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || || || || || |||||||| |||| |||||| || | ||||||| || | Sbjct 7835 ATCAATCGATCAGCCACGAACTCGATATACTTGCACATAAGATCACCGTTCATACCCACC 7894 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| ||||| | || | || ||||| ||||||| || ||||| ||| |||| Sbjct 7895 AACGCACAAGGCAGAGCATCACAGACGAACTCCCTCTCGATATCAACGGCATCGCGGATG 7954 Query 868931 ATCTGCCTG---GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || |||| || | ||| | |||| || || | |||||| |||| || Sbjct 7955 ATTCCCCTGACTCGCTCCTCGCTC---AGCTTCTTCTTCAGAAGCGTGTAAAGCAAACAC 8011 Query 868988 GCAAAGTCGCAGTGCAACCCT 869008 || || |||||||| |||||| Sbjct 8012 GCGAAATCGCAGTGTAACCCT 8032 >seq67444 Length=6066 Score = 154 bits (170), Expect = 2e-31 Identities = 235/332 (71%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 92601 TCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACG 92660 ||||||||||| ||||||||| ||||| | ||| | ||| || ||||| |||||| Sbjct 1070 TCGGCGATCTGCCGCGTGAGGTTTTCCTGGATCTGCAGGCGTCGGGCGAACATATCGACG 1011 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 ||||||| | ||| |||||| | | | |||| ||||| | ||| |||| |||||| Sbjct 1010 ATGCGCGCCAGCTTCGACAGGCCCAGCACCTTGCCGGTGGGGATATAGGCCACATGGGCC 951 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACG 92780 ||||| || ||||||||||| ||||||||||||| ||| | || |||| ||| | | Sbjct 950 TTGCCGATGAAGGGCAGCAGGTGGTGCTCGCACAGCGAGTACAACTCGATGTCCTTGAGG 891 Query 92781 ATCACCATCTCGCCCGAGGCCTCGGCAAAGAGCGCGTCGCCGATGGCCTCGGCCAGCGTC 92840 |||||||||||| | | || || ||||| || || | ||| |||| || Sbjct 890 ATCACCATCTCGTCATTATCGGAGGTGAACAGCGCACCGTTGACGATCTCTTCCAG-GTT 832 Query 92841 ATGC-GGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGGCGTGTCCAG 92899 ||| || |||| | | | | |||||||||||| ||||| | || ||||| || Sbjct 831 TTGCTCGTAGCCGTGACACAGGTACCGCATGGCCTTGGCGGCGCGCTTGGGAGTGTCGAG 772 Query 92900 GAGGCCCTCGCGCCGCACGTCCTCGCCCAGGC 92931 | ||| ||||| | ||| |||||||||| Sbjct 771 CAAGCCTTCGCGTTCCGGGTCTTCGCCCAGGC 740 >seq26752 Length=1779 Score = 134 bits (148), Expect = 2e-25 Identities = 187/260 (72%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| |||| || |||||||||||||| |||||||| Sbjct 24 CTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACACGAAGCATGGGCACGAGACCGTTGGA 83 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||| |||||||| | | ||| ||||| | ||| || | ||| | | | || Sbjct 84 AGTGCCATTGGTGCCACCAATGTAAGCGCCAGTGGCACGAATGCGGTGAGTGTTGAGACC 143 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || || ||||||||| | ||||| ||||| || |||||||| ||||| Sbjct 144 AATACCACCAGCGTTCTTGGAGATCATGGCGCAGATCTTGAGAGTATCGTAGATACCCTC 203 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACG--AGTTTTGCGGGTGCGCCGTG 1630302 || ||| |||||||||| | ||| ||||| |||| || | ||| || | || Sbjct 204 AATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGCTGTGC--CTGAGGGGTA 261 Query 1630303 CCGGCGTTGAAGAGCGTGGG 1630322 || ||| |||||||||| || Sbjct 262 CCTGCGCTGAAGAGCGTAGG 281 >seq59678 Length=4381 Score = 131 bits (144), Expect = 2e-24 Identities = 302/445 (68%), Gaps = 9/445 (2%) Strand=Plus/Minus Query 1726601 CCGCGCAGCACAATGTGCCCGTCGGCGTTGCCGGCGCTGTGGCAGGGGGCCGCGCGCCCG 1726660 ||||||||||| | |||| ||||| ||||| | | | ||| | |||| | | || Sbjct 3947 CCGCGCAGCACCAAGTGCGTGTCGGGATTGCCAGGGGTCTGGATGATCGCCGGGTGACCC 3888 Query 1726661 TCGCCGTCCA-GCCATAGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGC 1726719 | || ||| | ||| || | | ||||| |||| || | ||||| ||||| || Sbjct 3887 TGGCTGTCGACGCCGAAGTGACGG-TGCGGGTGGGACGCCGAGCGCATTGCGTCACAGGC 3829 Query 1726720 CGTCGCCACGCTCCCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACG- 1726778 |||| || | |||||||||||||||||||| || | || || ||| |||| | Sbjct 3828 AATCGCTACACCGCCGTCGGTGCCGTTCTTGAAACCCACGGGCATGCCCAG-GCCGCTGG 3770 Query 1726779 CCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCA 1726838 |||| |||||||| | ||| ||||| ||||||||||| | ||| |||| | | Sbjct 3769 CCATTTCGCGGTGGATCTGCGATTCGGTGGTGCGCGCGCCAATCGCGACCCAGCTGAGGA 3710 Query 1726839 GGTCTGCCAAATAAGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGA 1726898 |||| | || || ||| ||| ||| || | ||| ||| || ||| | ||| Sbjct 3709 GGTCATCGAAGTAGCCGGCTGCCATAGGTTGCAGCAGCTCAGTGGCGACCGGCAGGCCGA 3650 Query 1726899 CGGCGACGACGAGATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCA-GGCGG 1726957 |||| | | ||||||| ||| ||| ||| || |||||| |||||| | | Sbjct 3649 -GGCG--CAGCATTTCGCGCATCAGTTCGCGGGACAGGGTGAGGCCGGCGGCCATGTCAT 3593 Query 1726958 CACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGC 1727017 | | ||||| | | || ||| ||||||||| ||||| |||| ||| |||||||| Sbjct 3592 CGC-TGCCGTCCAAATGAGGATCGTAGGCCAGGCCTTTCCAGCCGATGGTGGTGCGCGGT 3534 Query 1727018 TTTTCGACATAGGCGCGCATGACCA 1727042 |||||||| |||||||| || |||| Sbjct 3533 TTTTCGACGTAGGCGCGGATCACCA 3509 >seq9444 Length=1116 Score = 113 bits (124), Expect = 5e-19 Identities = 227/333 (68%), Gaps = 8/333 (2%) Strand=Plus/Minus Query 92601 TCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACG 92660 |||||||||||||| ||||| ||||| | ||| | |||| | |||||||||| Sbjct 499 TCGGCGATCTGGCGGCTGAGGTTTTCCTGGATCTGCAGGCGGCGCGCGTACATGTCGACA 440 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 || |||| | |||| |||||| | | |||| | || | |||| | ||||| ||| Sbjct 439 ATCCGCGCAACCTTGGACAGGCCCAGCACTTTGCCGCTCGGGATGTAGGCTACGTGCGCC 380 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACG 92780 ||||| || || |||| ||| ||||| ||||||| ||| | || |||| ||| || Sbjct 379 TTGCCGATGAACGGCAACAGGTGGTGTTCGCACAGCGAGTACAACTCGATGTCCTTGACC 320 Query 92781 ATCACCATCTCGCCCGAGGCCTCGGCAAAGAGCGCGTCGCC---GATGGCCTCGGCCAGC 92837 | |||||| |||| | |||| || | | | || | || | || |||| Sbjct 319 AGCACCATTTCGC---TGTTGTCGGAGCTGAACAAGGCACCATTGGTGACTTCTTCCAGA 263 Query 92838 GTCATGC-GGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGGCGTGTC 92896 ||| ||| | |||||| | | | | ||| |||||||| | ||| | |||||||| Sbjct 262 GTC-TGCTCATAGCCGCGGCAGAGGTACTGCATCGCCTTGGCGGCACGCTTTGGCGTGTC 204 Query 92897 CAGGAGGCCCTCGCGCCGCACGTCCTCGCCCAG 92929 || ||||||||||| ||||||||||| || Sbjct 203 GAGCAGGCCCTCGCGGGAAACGTCCTCGCCGAG 171 >seq75625 Length=8981 Score = 104 bits (114), Expect = 3e-16 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1275769 GGCCTCAAGGCCAAGGACTTGATCGGACTGCCGTGGCGCGTGGCCTTTGCCCTGCAGGCC 1275828 ||||||||| | |||||| ||||||| | ||||||||||| ||||| || |||||||| Sbjct 8737 GGCCTCAAGCCGAAGGACCTGATCGGCATCCCGTGGCGCGTCGCCTTCGCGCTGCAGGCA 8678 Query 1275829 GACGGCTGGTACCTGCGCTCGGACATTATATGGCACAAGCCCAAC 1275873 |||||||||| |||||| |||||| || ||| ||||||||| Sbjct 8677 GACGGCTGGTGGCTGCGCCAGGACATCATCTGGTCGAAGCCCAAC 8633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6096267599054892