Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq43070 116 3e-21 seq115941 89.7 4e-13 >seq43070 Length=2765 Score = 116 bits (128), Expect = 3e-21 Identities = 205/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 34313 TGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCAT 34372 ||| | | ||||| ||||| | || ||| || | || |||||| |||||| || | Sbjct 880 TGACCACGGTCTCGGGGTTCTTGCAGTCCTTGCAAAGGACGAACTTGTTGATGAAGCCGT 939 Query 34373 CAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTT 34432 |||| ||||||| | ||| | ||||||| |||||||| || | || |||| | Sbjct 940 CAAGGTGGTCCTGCAGCTTGGAAGCCTCGTGGGCACCGTTGACAATCCAGCGGTCGTCCT 999 Query 34433 TGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGG 34492 | |||| | || || ||||| |||||| | |||||||| || | || | | Sbjct 1000 TAGGGTCGATGTTGGTCTGGGCGCCAAGCTCGAAACCGAAGTATTTGATGACATAGTTCG 1059 Query 34493 CCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGT 34552 ||| || | ||| | ||| | | | | | |||||||||||| |||||||| |||| Sbjct 1060 GCGGGCGGGCCAGCTGGTCGGCCACGTTGTGGAGGTTGACGATGACGGTCTTGATACCGT 1119 Query 34553 TGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 ||||||| ||||||| ||||| ||| | ||| ||||| |||||||| || ||| Sbjct 1120 TGCCCTTGCCTTCGATCTTGGACTGGATCTTCTCCATCTTGTAACGGTAGAAGGCATCC 1178 >seq115941 Length=36387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-C 110328 ||||||||| ||||| || || | || || |||||||| ||| |||| || |||| | Sbjct 4893 AATGCAAATTTTTGTGAAGACCCTTACGGGAAAAACCATCACCCTCGAGGTCGAGAGCTC 4834 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 ||| ||| | | | | ||||| ||| ||| ||||| || || | ||| ||| Sbjct 4833 TGA---TACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCCCCGGA 4777 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||| || | |||| ||| || || || ||||||||| ||| || | |||||||| Sbjct 4776 CCAACAGAGGTTGATTTTTGCTGGGAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTA 4717 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || || ||||| || | ||| | ||| Sbjct 4716 CAACATCCAGAAGGAATCAACCCTTCACCTTGTG 4683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| | || || |||||||| || | || |||| Sbjct 5348 ATGCAAATCTTTGTCAAAACCCTCACTGGAAAAACCATAACTTTGGAGGTGGAGAGCTCG 5289 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| |||||| ||||| || ||| | ||| || || Sbjct 5288 GACACCATTGACAATGTGAAAGCCAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 5229 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | || || || ||||| ||||||| ||||| | || ||||||||| Sbjct 5228 CAGCGGCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGGAGAACTCTCGCTGATTACAAC 5169 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || ||||| | ||| |||| Sbjct 5168 ATTCAGAAGGAGTCTACCCTCCACTTGGT 5140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412175046078668