Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq98467 255 3e-63 seq43102 113 2e-20 >seq98467 Length=19475 Score = 255 bits (282), Expect = 3e-63 Identities = 559/837 (67%), Gaps = 3/837 (0%) Strand=Plus/Plus Query 67568 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 67627 ||| |||| ||||| | | ||||||| ||| |||||||| || || || | ||| Sbjct 12095 ATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 12154 Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 || | || || |||||||||||||| ||||| || || | || || ||| | | Sbjct 12155 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 12214 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 67747 | ||| | || ||||| || | || | || | | |||||||||| || | || Sbjct 12215 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 12274 Query 67748 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 67807 |||||||||||||||| | || || | || ||| | || ||||| ||||| Sbjct 12275 GACCCTGAGTACGCCGGCAAATTGGGCGTCAACGTTGACGACCTGCTGGTTTCCCAGCCG 12334 Query 67808 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 67867 ||||| || ||||| |||||||| ||| ||| | || || || || | | Sbjct 12335 GACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGAC 12394 Query 67868 ATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATC 67927 | ||||| || ||||| ||||| ||||||||||| ||| || ||||||| || || Sbjct 12395 GTGATCGTGGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATG 12454 Query 67928 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 67987 || ||| |||||| |||||||| ||||| |||||||| ||||| |||| || | ||| Sbjct 12455 GGTGACATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACC 12514 Query 67988 GGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATC 68047 || | || | | ||||| || | | | || ||| | || ||||||| Sbjct 12515 GGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGATC 12574 Query 68048 GGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTAC 68107 ||| || | | ||||| || ||||||||||||||||| || ||| |||||| Sbjct 12575 GGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTAC 12631 Query 68108 GCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 68167 || ||||| ||| |||| ||||| | | || | | | ||| ||||| || |||| ||| Sbjct 12632 GCTTCGGTCCGTTTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTGTA 12691 Query 68168 GGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCT 68227 || | || ||||| || || || |||||||| |||| || || ||||||||| Sbjct 12692 GGTAGTGAAACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGCCAGGCC 12751 Query 68228 GAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCCGAACTCCTCGACATGGCC 68287 ||||| || |||||||| ||||||| | || | | ||| | ||||| ||| Sbjct 12752 GAGTTCCAGATTCTCTACGGCAAGGGCATCTACCTGAACGGCGAGATGATCGACCTGGGT 12811 Query 68288 GTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATC 68347 || | || || || |||| || || || |||| ||| | || || || Sbjct 12812 GTGCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGTATGCCTACAACGGCAGCAAAATT 12871 Query 68348 GGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGCC 68404 ||||| |||||| |||| | | ||| ||| ||||||||||| |||| ||| Sbjct 12872 GGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCTGCC 12928 >seq43102 Length=2767 Score = 113 bits (124), Expect = 2e-20 Identities = 232/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 68072 GAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGC 68131 ||||||||||| || || || || ||| ||||||||||||||||| | || | ||| Sbjct 810 GAGACCACCACGGGCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATACGC 751 Query 68132 AGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 68191 | ||| | ||| |||||| |||| ||||| ||||||||| ||||| ||||| Sbjct 750 CGCATCTCGACCCTGAAGGATCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTG 691 Query 68192 GTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAG 68251 || ||||||||| | ||||| ||| | |||| ||||| |||| | | ||||||| Sbjct 690 GTGAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAG 631 Query 68252 GGCATTTCCCGCGAGGCCGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCATCAAGAAG 68311 ||| | || | | || || ||||| | | ||| || || || ||||| Sbjct 630 GGCGTGTCGAAGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAG 571 Query 68312 TCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGCAAGCCCAAGACCGTG 68371 || || ||||||||| ||| | || | ||||||||||| | | ||| || | Sbjct 570 TCAGGCGCCTGGTTCTCGTATAACAGCCAGCGCCTCGGCCAGGGC---CGCGAGAACGCG 514 Query 68372 CAG---TGGCTGAAGGACAACCCGGACGTCGCCGCCTCCATCGA 68412 || | ||| ||||||||| | |||||||| ||||| Sbjct 513 AAGGGCTTCCTGCGCGACAACCCGAAGATCGCCGCCGAGATCGA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247050079939008