Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq59399 264 2e-65 seq108658 114 2e-20 seq73381 107 3e-18 seq62099 93.3 7e-14 >seq59399 Length=4332 Score = 264 bits (292), Expect = 2e-65 Identities = 314/419 (75%), Gaps = 10/419 (2%) Strand=Plus/Plus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||||||||| || || || | || || ||||| || | ||| ||| ||||||| || Sbjct 3146 CTGGCCCTGATACTTGCCTGCACGGTCTTTGTAGGACACTTCACAGGCCTCGTCGGACTG 3205 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584 | ||||||||||||||||| |||||||| ||||| | ||||||||| |||| || Sbjct 3206 CAGGAACAGCATCTGCGCCACGCCTTCGTTGGCGTAGATTTTCGCCGGCAGCGTGGTGGT 3265 Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644 |||| |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| Sbjct 3266 GTTGGAAAACTCCAGGGTCACGTGGCCTTCCCACTCGGGTTCAAGCGGTGTCACGTTGAC 3325 Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704 |||||| || ||||||||||||||||| ||||||| || | || |||| || || Sbjct 3326 GATGATGCCGCAGCGCGCGTAGGTGCTTTTACCCAGGCAGATGGTCAGCACGTCACGGGG 3385 Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC- 35763 ||| |||||| |||| || ||||| ||||| |||||| |||||||||||| ||||| Sbjct 3386 AATACGGAAGAATTCCACGGTGCGCGCCAGGGCGAAGGAGTTCGGCGGAAT---GATGCA 3442 Query 35764 --TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTG 35820 ||| ||| | || | | | || ||| || |||||||| ||||| || | | Sbjct 3443 CACGTCGCTCTTGA-CGTCGACGAAGCTCTTTTCGTCAAAGTTCTTTGGATCGACGATCG 3501 Query 35821 CGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGTCATAACCATA 35878 | |||||||||||||| || | |||||||||| ||| ||||| || || || || Sbjct 3502 CCGAATTGATGTTGGTGAACACCTTGAACTCATCGGC-GCAGCGCACATCGTAGCCGTA 3559 >seq108658 Length=27099 Score = 114 bits (126), Expect = 2e-20 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 6655 GCCGGTATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 6714 Query 120288 CCTGATGCCGGCACCA 120303 |||| ||||||||||| Sbjct 6715 CCTGGTGCCGGCACCA 6730 >seq73381 Length=8134 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062 || |||| || |||||||||||||||||||||||||| || || | || || || || | Sbjct 2485 GTTCCAGGCGCGCGATGATTTCGGAGTTCATGCTGCGGTGATGATTGCGAGCCACCTCGG 2544 Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCTG 247121 | |||||||| ||||| || || |||| ||| ||||| |||||||| || | |||||| Sbjct 2545 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAACTTGTCAGCCGTACGGCTG 2603 >seq62099 Length=4805 Score = 93.3 bits (102), Expect = 7e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 122605 CGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCGAG 122664 ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| Sbjct 4710 CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAA 4651 Query 122665 TCCAACACGACCCACCAGTTT 122685 ||| ||||||||||||| ||| Sbjct 4650 TCCCACACGACCCACCATTTT 4630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 824549123075040