Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq109206 176 7e-38 seq67444 150 3e-30 seq59678 150 3e-30 seq9444 136 6e-26 seq26752 116 6e-20 seq131524 109 9e-18 seq25391 107 3e-17 seq108377 104 4e-16 seq75625 100 4e-15 >seq109206 Length=27697 Score = 176 bits (194), Expect = 7e-38 Identities = 212/289 (73%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 ||| || ||||| | ||||| ||||| |||||||| || || ||||| || || ||||| Sbjct 8065 GAGACCCGGCATCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAA 8124 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 ||||| ||||||||| ||| || ||| | |||||| || |||| || ||| || Sbjct 8125 GAAGATCCCCTCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGATTCTGAGCCGTC 8184 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555 ||||||| |||| ||||||| ||||| || ||| | || | || ||||| Sbjct 8185 ------GATCCACCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGAT 8238 Query 794556 GGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615 |||| |||||||| ||| |||||| ||||||| || | ||| || || | | ||| Sbjct 8239 GGCGTGAAAGAGGCGGTTCTTCTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACT 8298 Query 794616 GTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||| |||| ||||| || || ||||| ||||||||||| ||||||||| Sbjct 8299 GTACATCTCAGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAG 8347 >seq67444 Length=6066 Score = 150 bits (166), Expect = 3e-30 Identities = 286/416 (69%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 118625 CACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGC 118684 ||| |||||||| || ||||||||| | | |||| ||| ||| | |||||| ||| Sbjct 1152 CACACCGCGCATCATCATGCACATGTGCTTGGCTTCGATCACCACGGCCACGCCG-GCG- 1095 Query 118685 GCCCGTG--ACCTCGCTGATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGG 118742 ||| | | || || ||| ||||||||||| |||||||| ||||| | ||| Sbjct 1094 GCCTGGGTCACGTCCTGGATCGCGTCGGCGATCTGCCGCGTGAGGTTTTCCTGGATCTGC 1035 Query 118743 AAGCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCC 118802 | ||| | || ||| ||||||||||||| | ||| |||||| | | | |||| Sbjct 1034 AGGCGTCGGGCGAACATATCGACGATGCGCGCCAGCTTCGACAGGCCCAGCACCTTGCCG 975 Query 118803 GCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATG 118862 | ||| | ||| |||| || ||||||||||| ||||||||||| ||||||||||||| Sbjct 974 GTGGGGATATAGGCCACATGGGCCTTGCCGATGAAGGGCAGCAGGTGGTGCTCGCACAGC 915 Query 118863 GAGAAAAAGTCAATGTCGCGCACGGTCACCATCTCGCCCGACGTCTC---GGCAAAGAGG 118919 ||| | || || ||||| | | ||||||||||| | | || || || || Sbjct 914 GAGTACAACTCGATGTCCTTGAGGATCACCATCTCGTC---ATTATCGGAGGTGAACAGC 858 Query 118920 GCGTCGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCC 118979 || || |||| ||| ||||| | | || |||| | | | | ||||||| Sbjct 857 GCACCGTTGACGATCTCTTCCAGGTTTTGCTCGTAGCCGTGACACAGGTACCGCATGGCC 798 Query 118980 TTGGCCACGCGCATGGGCGTGTCCAAGAGGCCCTCGCGCGCCACGTCCTCGCCCAG 119035 ||||| ||||| |||| ||||| | | ||| ||||| || ||| |||||||| Sbjct 797 TTGGCGGCGCGCTTGGGAGTGTCGAGCAAGCCTTCGCGTTCCGGGTCTTCGCCCAG 742 >seq59678 Length=4381 Score = 150 bits (166), Expect = 3e-30 Identities = 336/494 (68%), Gaps = 9/494 (2%) Strand=Plus/Minus Query 2174919 GCATCGAAATTGGGCCGACCGGGCGAGCCCCGCAGCACAATGTGACCGTCGGGGTTGCCA 2174978 |||||| | || |||| || | || ||| |||||||| | ||| |||||| |||||| Sbjct 3974 GCATCGTAGTTCGGCCCACGGTGCCCGCCGCGCAGCACCAAGTGCGTGTCGGGATTGCCA 3915 Query 2174979 GTGCTGCGGCAGGCGGCAGCGCGACCGTCGCCGTCGATCCAGA-GAAAGGTGTGTGGCTG 2175037 | | | || | || | | |||| | || ||||| | || | | | ||| || || Sbjct 3914 GGGGTCTGGATGATCGCCGGGTGACCCTGGCTGTCGACGCCGAAGTGACG-GTGCGGGTG 3856 Query 2175038 CGCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAA 2175097 | || | ||||| || || || | || || | ||||||||||||||| || || Sbjct 3855 GGACGCCGAGCGCATTGCGTCACAGGCAATCGCTACACCGCCGTCGGTGCCGTTCTTGAA 3796 Query 2175098 CCCGACCGGCAACGGCAGCGCCGACG-CCATTTCGCGGTGCACCTGGCTCTCGGTGGTGC 2175156 || || |||| ||| |||| | ||||||||||||| | ||| |||||||||| Sbjct 3795 ACCCACGGGCATGCCCAG-GCCGCTGGCCATTTCGCGGTGGATCTGCGATTCGGTGGTGC 3737 Query 2175157 GCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCGCCACCAAAGGGCTGA 2175216 ||||||| | ||| |||| | |||||| | || ||| || ||| ||| | Sbjct 3736 GCGCGCCAATCGCGACCCAGCTGAGGAGGTCATCGAAGTAGCCGGCTGCCATAGGTTGCA 3677 Query 2175217 GAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCG 2175276 | | ||| || || ||| |||||| | || | || ||||||| |||| || | Sbjct 3676 GCAGCTCAGTGGCGACCGGCAGGCCGA-GGCG--CAGCATTTCGCGCATCAGTTCGCGGG 3620 Query 2175277 ATGTGGCGAGGCCGGCGGCCA-GGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGG 2175335 | || |||||||||||||| | | | | ||||| | | || ||| ||||||| Sbjct 3619 ACAGGGTGAGGCCGGCGGCCATGTCATCGC-TGCCGTCCAAATGAGGATCGTAGGCCAGG 3561 Query 2175336 CCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACCAGGAGA 2175395 || ||||| |||| ||| |||||||| |||||||| |||||||| || |||| ||| | Sbjct 3560 CCTTTCCAGCCGATGGTGGTGCGCGGTTTTTCGACGTAGGCGCGGATCACCAGCAGCATC 3501 Query 2175396 GCGTCGCCGACCTC 2175409 ||||| ||| || Sbjct 3500 TGGTCGCTGACTTC 3487 >seq9444 Length=1116 Score = 136 bits (150), Expect = 6e-26 Identities = 281/413 (68%), Gaps = 4/413 (1%) Strand=Plus/Minus Query 118625 CACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGC 118684 ||| |||||||| || ||||||||| | | |||| ||| ||| | ||||| | || Sbjct 581 CACACCGCGCATCATCATGCACATGTGCTTGGCTTCGATCACCACGGCCACGCCCAGGGC 522 Query 118685 GCCCGTGACCTCGCTGATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAA 118744 ||| || || | | | |||||||||||||| |||| ||||| | ||| | Sbjct 521 GCCGGTCACTTGCATCACCGCGTCGGCGATCTGGCGGCTGAGGTTTTCCTGGATCTGCAG 462 Query 118745 GCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCC-CG 118803 |||| || | ||||||||| || |||| | |||| |||||| | | |||| | Sbjct 461 GCGGCGCGCGTACATGTCGACAATCCGCGCAACCTTGGACAGGCCCAGCACTTTGCCGCT 402 Query 118804 CGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGG 118863 |||| | |||| | ||||||||||||||||| || |||| ||| ||||| ||||||| | Sbjct 401 CGGG-ATGTAGGCTACGTGCGCCTTGCCGATGAACGGCAACAGGTGGTGTTCGCACAGCG 343 Query 118864 AGAAAAAGTCAATGTCGCGCACGGTCACCATCTCGCCCGACGTCTCGGC-AAAGAGGGCG 118922 || | || || ||||| || |||||| ||| | | ||| || || | ||| Sbjct 342 AGTACAACTCGATGTCCTTGACCAGCACCATTTCG-CTGTTGTCGGAGCTGAACAAGGCA 284 Query 118923 TCGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTG 118982 | | | | || |||| ||| | | |||||| | | | | ||| |||||| Sbjct 283 CCATTGGTGACTTCTTCCAGAGTCTGCTCATAGCCGCGGCAGAGGTACTGCATCGCCTTG 224 Query 118983 GCCACGCGCATGGGCGTGTCCAAGAGGCCCTCGCGCGCCACGTCCTCGCCCAG 119035 || | ||| | |||||||| | ||||||||||| | ||||||||||| || Sbjct 223 GCGGCACGCTTTGGCGTGTCGAGCAGGCCCTCGCGGGAAACGTCCTCGCCGAG 171 >seq26752 Length=1779 Score = 116 bits (128), Expect = 6e-20 Identities = 183/260 (70%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| |||| || ||||||||||| || |||||||| Sbjct 24 CTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACACGAAGCATGGGCACGAGACCGTTGGA 83 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||| |||||||| | | ||| ||||| | ||| || | ||| | | | || Sbjct 84 AGTGCCATTGGTGCCACCAATGTAAGCGCCAGTGGCACGAATGCGGTGAGTGTTGAGACC 143 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || || ||||||||| | ||||| | || || || |||||||| ||||| Sbjct 144 AATACCACCAGCGTTCTTGGAGATCATGGCGCAGATCTTGAGAGTATCGTAGATACCCTC 203 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACG--AGTTTTGCGGGCGCGCCGTG 2073777 || ||| |||||||||| | || ||||| |||| || | ||| | | | || Sbjct 204 AATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGCTGTGCCTGAGGG--GTA 261 Query 2073778 CCGGCATTGAAGAGCGTGGG 2073797 || || |||||||||| || Sbjct 262 CCTGCGCTGAAGAGCGTAGG 281 >seq131524 Length=96950 Score = 109 bits (120), Expect = 9e-18 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| |||||||||||| |||||| ||||| | | Sbjct 14530 TGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAACTCGCCTGGAA 14589 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||||||||||||||| || | | || ||| |||||| | Sbjct 14590 GAACCAATCGAACGGCGGTCTGGATCTCCCGAGAGGTAATGGTGGGCTTCTTGTTGTACC 14649 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTT 1485647 || || || | || | | || | || |||| |||||||||| || ||| Sbjct 14650 TAGCAAGACGAGACGATTCCTGAGC--AAGCTTCTCGAAAATGTCGTTGATGAAACTGTT 14707 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||||||| ||| | ||| ||| || || | ||||||||| |||||||| || ||||| Sbjct 14708 CATGATCCCCATTGCCTTGCCGGATATCCCAATGTCGGGGTGAACCTGCTTCAGGACCTT 14767 Query 1485708 G 1485708 | Sbjct 14768 G 14768 >seq25391 Length=1636 Score = 107 bits (118), Expect = 3e-17 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| |||| || || ||| | | Sbjct 766 GTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCAAGCTCACCGGGAAG 707 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| ||||| |||| ||||||||||| |||| ||| ||| |||||| || | Sbjct 706 GATTAGGCGGACGGAAGTCTGGATCTCACGGGAAGAGATGGTGGACTTCTTGTT-GTAGG 648 Query 1485591 CGCCAGGC-GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 || || || | ||||||||| ||| ||| |||| ||||| Sbjct 647 CGGCAAGCTTGGAGGCCTCGGTTGCGACGCGCTCGAAGATGTC 605 >seq108377 Length=70614 Score = 104 bits (114), Expect = 4e-16 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| |||||||||||||| |||||||||||| | || || || ||| | | | Sbjct 3852 ACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCGAGCTCACCGGGAAGAA 3911 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTGCGC 1485591 ||||| ||||||||||| ||||| || | | || || | || |||||| ||| Sbjct 3912 CAAGGCGAACGGCGGTCTGAATCTCCCGAGAGGTAATGGT-TGGCTTCTTGTTGTAGCGA 3970 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 || || | | ||| || || | || || | ||||| |||| || |||||| Sbjct 3971 GCGAGTCTGGAGGCTTC-CTGAGCAAGCTTCTCAAAGATGTCATTGATGAAGCTGTTCAT 4029 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| ||||||| || | ||||| || ||||||||||| |||||| Sbjct 4030 AATGCCCATGGCCTTGCTGGAGATTCCGATATCGGGATGAACCTGCTTGAGAACCTTG 4087 >seq75625 Length=8981 Score = 100 bits (110), Expect = 4e-15 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1511307 GGCCTCAAGGCCAAAGACCTGATCGGGCTGCCGTGGCGCGTGGCCTTTGCCCTGCAGGCC 1511366 ||||||||| | || ||||||||||| | ||||||||||| ||||| || |||||||| Sbjct 8737 GGCCTCAAGCCGAAGGACCTGATCGGCATCCCGTGGCGCGTCGCCTTCGCGCTGCAGGCA 8678 Query 1511367 GACGGGTGGTACCTGCGCTCCGACATCATATGGCACAAGCCCAAC 1511411 ||||| |||| |||||| |||||||| ||| ||||||||| Sbjct 8677 GACGGCTGGTGGCTGCGCCAGGACATCATCTGGTCGAAGCCCAAC 8633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7902154323656964