Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_022330.1 Length=76586 Score E Sequences producing significant alignments: (Bits) Value seq98467 280 7e-71 seq43102 143 1e-29 >seq98467 Length=19475 Score = 280 bits (310), Expect = 7e-71 Identities = 519/759 (68%), Gaps = 7/759 (1%) Strand=Plus/Plus Query 66131 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 66190 ||| |||| |||||| | | ||||||| ||| || ||||| || || || | ||| Sbjct 12095 ATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 12154 Query 66191 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66250 || | || ||||||||||| || |||||||| || || | || ||| || | | Sbjct 12155 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 12214 Query 66251 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 66310 | ||| | |||||||| || | || | || | | ||||||| |||||| ||||| Sbjct 12215 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 12274 Query 66311 GACCCCGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 66368 ||||| ||||||||| ||| | || || || | ||| |||| |||| |||| Sbjct 12275 GACCCTGAGTACGCC--GGCAAATTGGGCGTCAACGTTGACGACCTGCTGGTTTCCCAGC 12332 Query 66369 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 66428 ||||||| || ||||| |||||||| ||| ||| | || || || || | Sbjct 12333 CGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCG 12392 Query 66429 CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 66488 | | |||| || ||||| ||||| ||||||||||| || || |||||||||| | Sbjct 12393 ACGTGATCGTGGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAA 12452 Query 66489 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 66548 | || |||| ||||| |||||||| || || || ||||| ||||| |||| || ||| Sbjct 12453 TGGGTGACATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCA 12512 Query 66549 CTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 66608 | || | |||| | | ||||| ||| | ||| |||||||| | || ||||| Sbjct 12513 CCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGA 12572 Query 66609 TCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCT 66668 ||||| || | | ||||| || |||||||| || || || || ||| ||||| Sbjct 12573 TCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 12629 Query 66669 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66728 |||| || ||||| |||| |||| || | || | | | ||| ||||| || |||| || Sbjct 12630 ACGCTTCGGTCCGTTTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTG 12689 Query 66729 TCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACG 66788 | || | ||||| || |||||||| |||||||| |||||||||| |||| | | Sbjct 12690 TAGGTAGTGAAACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGCCAGG 12749 Query 66789 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 66848 |||||||| | | ||||| ||||||||| | | | ||| | ||||||||| Sbjct 12750 CCGAGTTCCAGATTCTCTACGGCAAGGGCATCTACCTGAACGGCGAGATGATCGACCTGG 12809 Query 66849 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 66887 ||| ||| || | || |||| || || || |||| Sbjct 12810 GTGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGT 12848 >seq43102 Length=2767 Score = 143 bits (158), Expect = 1e-29 Identities = 216/305 (71%), Gaps = 9/305 (3%) Strand=Plus/Minus Query 66588 TCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGG 66647 |||||||| | || |||||||||| ||| |||||| ||||||||||||| Sbjct 854 TCAACCAGATCCGGATGAAGATCGGC---GTGATGTACGGCAGCCCCGAGACCACCACGG 798 Query 66648 GCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCG 66707 |||| || || ||| |||||||||||| || ||| | || | || |||||| | ||| Sbjct 797 GCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATACGCCGCATCTCGACCC 738 Query 66708 AGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGC 66767 |||||| |||| ||||| ||||||||| ||| || || || || ||||||||| Sbjct 737 TGAAGGATCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTGGTGAAGAACAAGG 678 Query 66768 TGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG 66827 | || |||||| | | | ||||||| | || ||| ||| |||||| | ||| Sbjct 677 TCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTGTCGA--- 621 Query 66828 AGGTCG---AACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCT 66884 |||||| | || ||||||| | |||| | ||| | || ||||||| ||||||| Sbjct 620 AGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAGTCAGGCGCCT 561 Query 66885 GGTTC 66889 ||||| Sbjct 560 GGTTC 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244554915025492