Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq14930 271 2e-68 >seq14930 Length=1213 Score = 271 bits (300), Expect = 2e-68 Identities = 593/872 (68%), Gaps = 22/872 (3%) Strand=Plus/Plus Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732 ||| || ||||| ||||||||||| || | ||||| ||||| |||| || | ||| Sbjct 84 GTTGTAGAACATCTCGATGTAATCGAACACATCACTACGAGCATCTTGCCGTGAGGTGTA 143 Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792 ||| || ||| || ||||| |||||||| ||||||||||| || || || || ||||| Sbjct 144 GATTTTCCGCTTGATTCGTTCCCGTTTCAGAAGCTGGAAAAAGCTCTCAGCCACGGCGTT 203 Query 18793 GTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGA 18852 ||||||||| || || || |||||||| ||| | ||| || || |||| || | Sbjct 204 GTCATGACAATTGCCTCGGCGGCTCATGCTGGCAACCAAATTGTTTGCCTTCAAAAA--A 261 Query 18853 CTGC--CACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTT 18910 |||| || || |||| ||||||| ||||| || || || ||||||| ||||| | | Sbjct 262 CTGCGCCAATCGGAGCTGCTGTACTGGCTGCCCTGGTCGGAGTGAACCATCACCTCTTGT 321 Query 18911 TGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATC 18970 | || || || | ||| || ||||||| | |||| | | | | ||| | |||||| Sbjct 322 TTCGGTTTTCGCCTCCAAACCGCCATCAATAACGCATCAATGGCCAAATCACTGGTCATC 381 Query 18971 CGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGA 19030 | | || |||||||||||||| || | || || ||||| || | ||||| |||| | Sbjct 382 TGCGACTTCATTGACCAGCCAACGACCTGACGAGAAAACAGATCCAGCACCACCGCCAAA 441 Query 19031 TACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCCGGT 19090 |||||||||||||| | || || |||||||||||||| || |||||| || | ||| Sbjct 442 TACAGCCAGCCTTCATACGTACGAATGTAGGTGATGTCGGTGACCCAAACCTTGTTGGGT 501 Query 19091 GCTTCCGAGTTGAACTGCCGCTGGAGCCTGTTGGGCGTCACGA-TGCTGG-TTTCACCCT 19148 | | | ||||| |||| || ||||| | ||| ||||| || | || Sbjct 502 TCCACGACATCGAACTCGCGCTTCAGTAAATTGGGTGAGGCGACCGCTGGCTTACCGCCG 561 Query 19149 TACGTGCCCGTG-GGCTACGGTACCCGACCT--GAGCCCTTATC-CCGGCACGCTTCATC 19204 ||| | || | | | | || ||||| || |||| | ||| | |||| ||| | Sbjct 562 TACTTTCCAGGGCGACGTCGATACCCTGTCTGAGAGCGCAGATCTTCAAGACGCATCAAC 621 Query 19205 AGTCGCCAGACACGGTTAACTCCGCACTGTTGTCCGGTATCCCGCAGGTCGAGGTGGATC 19264 ||||| ||||| | || || | || ||| || ||||||||| ||||| Sbjct 622 -CTCGCC--ACACGATGCCGACCACAATCTTCACCGACCTCGCGCAGGTCGTCATGGATT 678 Query 19265 TTGCGATAACCATAAACGCAACCCGACTCCAGCCAGAACTGCTTTATCAGCCCCGTCAGC 19324 |||||||| |||||||| | || ||||||||| | ||||| |||| ||| || Sbjct 679 TTGCGATAGCCATAAACTCCGCCGCTCTCCAGCCACGAGTGCTTGATCAAACCCAGCAAT 738 Query 19325 CTCAGGTCAGCATGATGCCGCCGTGAATCCGGCTGCTGA-AGCCAGGCGTAAAAACCACT 19383 | | |||| | | | || || | ||||| | || | ||| |||||| ||||||| Sbjct 739 CGCTGGTCGTCTTTAGCGCGTGCAGATTGCGGCT-CAGACAACCAAGCGTAATAACCACT 797 Query 19384 CGGATGCACATCCAGCACCCGACAAAGCAGTCGGACAGGCCAGCAATGG---GTGTTGTC 19440 ||||| || | |||| | | |||||| |||| | | || | | | | | | Sbjct 798 GGGATGGACTTTCAGCGTCAGGCAAAGCCGTCGAATGG---AGTAGTCGCCCGCGCGCTG 854 Query 19441 ACGGATAAAGGCGTACCTCAGTCGGACAGCTTTGCGAAGTACGCCGCTG-TAGATTCAAT 19499 ||||||||||||| |||| || || ||| || |||||||| || | || || Sbjct 855 CTTGATAAAGGCGTACTTCAGCCGCACTCCTTGGCAAAGTACGCGGCGGCCTTTTTTAAG 914 Query 19500 ATGTCCCGTTCGTCGGTAACCCGCTTCAGCTC 19531 ||||| || || || || |||||||| || || Sbjct 915 ATGTCTCGCTCTTCAGTGACCCGCTTGAGTTC 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126904046024640