Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_022915.1 Length=40471 Score E Sequences producing significant alignments: (Bits) Value seq93341 190 5e-44 >seq93341 Length=16452 Score = 190 bits (210), Expect = 5e-44 Identities = 358/517 (69%), Gaps = 26/517 (5%) Strand=Plus/Minus Query 34752 TTGCCTTCCATTTCGTCTGCCGTTGGTTGGCTA--CCGACTTCGGGGAAAGCCTTGCGCA 34809 ||||||||||| ||||| || ||||| ||| |||||||| ||||| || ||||||| Sbjct 4461 TTGCCTTCCATCTCGTCGGCAGTTGGC--GCTGATCCGACTTCAGGGAATGCTTTGCGCA 4404 Query 34810 GAGCCTGTGCCTCGGCACACTTGGCGATCTGCCCATAAGGTCGCTTCTGCCACATGAGGT 34869 | ||||| |||||||| || ||||||| ||| || | | ||| || ||||||| || Sbjct 4403 GGGCCTGGGCCTCGGCGCATTTGGCGAGCTGGGCAAATGCTCGGCGCTTCCACATGGCGT 4344 Query 34870 TGGGGGCGATGCTTTTTTCTTTGCCACCCTTGACG--GCGTAGTTCTCCTTCCAGAACTC 34927 |||| || || | | ||| ||||| | |||||||| || |||| ||| Sbjct 4343 TGGGCGCC--GCAGTGTCCTTG------CTTGATGTCGCGTAGTTTTCAAGCCAGCGCTC 4292 Query 34928 GCTGGCCGTGAACTTC----ACGATGTCGCCTGATGGCATGCGTCGTGAGACGGTCACGC 34983 |||||||| | ||| || | | || || | ||| | || ||||||||||| Sbjct 4291 ATTGGCCGTGTA-TTCGGCAACAAGGCCGT-TGCT--CATCTGCCGCTTGACGGTCACGC 4236 Query 34984 GACACCATTGCGGAAACGTAATCTCGACACCGCCGATGACTTCGGTCTTGTC--AGGGCC 35041 | ||||||| ||| |||| | ||||| |||| | |||| | || | |||||| Sbjct 4235 GGCACCATTCGGGATACGTGACTTCGACGCCGCTCA--ACTTGGCCGTTACCGAAGGGCC 4178 Query 35042 GAACTCAGGCTCGGTGATGCCCGCGTATTCGCCCGTACGCGCTGCATCCGTGCGGTACAG 35101 | || |||||| |||| || ||||| | || || ||||| || | |||| ||||| Sbjct 4177 ATATTCCGGCTCGCTGATCCCTGCGTACTGCCCGGTGCGCGCCGCTTGAATGCGATACAG 4118 Query 35102 ACCGATTCCGGGCATCACCACGTCACGCATTTGTCCAGTCTTGCTGTCCCACATTGGCAC 35161 || || || ||||| ||| ||| |||| | | ||||| || ||| || || || Sbjct 4117 GCCAATACCCGGCATAACCGTGTCCTGCATCTTTTTCGTCTTCGAGTTCCAGATCGGAAC 4058 Query 35162 GATGTGAACGGGCTTGCGCATCGGGTCAAGGCCCGCAGCCTTGCAGTAGCCCAGCACCAT 35221 |||||| || ||||| ||| ||||| ||| ||| |||| |||||| ||| |||||| Sbjct 4057 GATGTGCACCGGCTTCAACATTGGGTCCAGGTGCGCGGCCTGGCAGTAAGCCAACACCAT 3998 Query 35222 CTTGATCGATTGGTGCGATGCGCCGGGGTAGAGGCTG 35258 | || || | | |||||||||||||||||| Sbjct 3997 CACGACTGAGTTCTTTTCGGCGCCGGGGTAGAGGCTG 3961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129182056719896