Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_022969.1 Length=76217 Score E Sequences producing significant alignments: (Bits) Value seq98467 284 6e-72 seq43102 152 3e-32 >seq98467 Length=19475 Score = 284 bits (314), Expect = 6e-72 Identities = 520/759 (69%), Gaps = 7/759 (1%) Strand=Plus/Plus Query 66118 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 66177 ||| |||| |||||| | | ||||||| ||| || ||||| || || || | ||| Sbjct 12095 ATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 12154 Query 66178 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66237 || | || ||||||||||| || |||||||| || || | || ||| || | | Sbjct 12155 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 12214 Query 66238 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 66297 | ||| | |||||||| || | || | || | | ||||||| |||||| ||||| Sbjct 12215 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 12274 Query 66298 GACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 66355 ||||||||||||||| ||| | || || || | ||| |||| |||| |||| Sbjct 12275 GACCCTGAGTACGCC--GGCAAATTGGGCGTCAACGTTGACGACCTGCTGGTTTCCCAGC 12332 Query 66356 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 66415 ||||||| || ||||| |||||||| ||| ||| | || || || || | Sbjct 12333 CGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCG 12392 Query 66416 CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 66475 | | |||| || ||||| ||||| ||||||||||| || || |||||||||| | Sbjct 12393 ACGTGATCGTGGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAA 12452 Query 66476 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 66535 | || |||| ||||| |||||||| || || || ||||| ||||| |||| || ||| Sbjct 12453 TGGGTGACATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCA 12512 Query 66536 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 66595 |||| | |||| | | ||||| ||| | ||| |||||||| | || ||||| Sbjct 12513 CCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGA 12572 Query 66596 TCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 66655 ||||| || | | ||||| || |||||||| || || || || ||| ||||| Sbjct 12573 TCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 12629 Query 66656 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66715 |||| || ||||| |||| |||| || | || | | | ||| ||||| || |||| || Sbjct 12630 ACGCTTCGGTCCGTTTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTG 12689 Query 66716 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACG 66775 | || | ||||| || || ||||| |||||||| |||||||||| |||| | | Sbjct 12690 TAGGTAGTGAAACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGCCAGG 12749 Query 66776 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 66835 |||||||| | | ||||| ||||||||| | | | ||| | ||||||||| Sbjct 12750 CCGAGTTCCAGATTCTCTACGGCAAGGGCATCTACCTGAACGGCGAGATGATCGACCTGG 12809 Query 66836 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 66874 ||| ||| || | || |||| || || || |||| Sbjct 12810 GTGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGT 12848 >seq43102 Length=2767 Score = 152 bits (168), Expect = 3e-32 Identities = 218/305 (71%), Gaps = 9/305 (3%) Strand=Plus/Minus Query 66575 TCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGG 66634 |||||||| | || |||||||||| ||| |||||| ||||||||||||| Sbjct 854 TCAACCAGATCCGGATGAAGATCGGC---GTGATGTACGGCAGCCCCGAGACCACCACGG 798 Query 66635 GCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCG 66694 ||||||| || ||| |||||||||||| || ||| | || | || |||||| | ||| Sbjct 797 GCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATACGCCGCATCTCGACCC 738 Query 66695 AGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGC 66754 |||||| |||| ||||| ||||||||| ||| || ||||| || ||||||||| Sbjct 737 TGAAGGATCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTGGTGAAGAACAAGG 678 Query 66755 TGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG 66814 | || |||||| | | | ||||||| | || ||| ||| |||||| | ||| Sbjct 677 TCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTGTCGA--- 621 Query 66815 AGGTCG---AACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCT 66871 |||||| | || ||||||| | |||| | ||| | || ||||||| ||||||| Sbjct 620 AGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAGTCAGGCGCCT 561 Query 66872 GGTTC 66876 ||||| Sbjct 560 GGTTC 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243376021487608