Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq73381 84.2 6e-12 seq70493 80.6 7e-11 >seq73381 Length=8134 Score = 84.2 bits (92), Expect = 6e-12 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 |||||||||||||||||||||||| ||| || | || ||| | ||||||||||||||||| Sbjct 344 CGACAGGATTCGAACCTGTGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCT 285 Query 21132 ACG-GGGCCGATT 21143 ||| | || |||| Sbjct 284 ACGAGTGCAGATT 272 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 |||||||||||||||||||||||| ||| || | || ||| | ||||||||||||||||| Sbjct 195 CGACAGGATTCGAACCTGTGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCT 136 Query 21132 ACG 21134 ||| Sbjct 135 ACG 133 >seq70493 Length=7061 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||||||| ||||||||| ||||||| || ||| | ||| || ||||||||| Sbjct 4079 TGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTATCC 4020 Query 21123 AGCTGAGCTACGGG 21136 |||||||||||||| Sbjct 4019 AGCTGAGCTACGGG 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139064086285712