Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq115941 93.3 3e-14 seq86116 93.3 3e-14 >seq115941 Length=36387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||||||||| | || || |||||||| || | || |||| ||| | Sbjct 5348 ATGCAAATCTTTGTCAAAACCCTCACTGGAAAAACCATAACTTTGGAGGTGGAGAGCTCG 5289 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| |||||| || || || ||| | ||| || || Sbjct 5288 -GACACCATTGACAATGTGAAAGCCAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCA 5230 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | ||||| | || || || ||||| ||||| | | ||| | || || ||||| Sbjct 5229 GCAGCGGCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGGAGAACTCTCGCTGATTACAA 5170 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| ||||||||||| | ||| |||| Sbjct 5169 CATTCAGAAGGAGTCTACCCTCCACTTGGT 5140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||||||| | || || || ||||| || | || ||| ||| | Sbjct 5576 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAGACCATCACTTTGGAGGTCGAGAGCTCG 5517 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| ||||| || ||| | ||| || || Sbjct 5516 -GACACCATCGACAACGTGAAAGCTAAGATTCAAGATAAGGAGGGCATTCCCCCAGACCA 5458 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || || || ||||| | | ||| | || |||||||| Sbjct 5457 GCAGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGGACACTCGCAGACTACAA 5398 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| ||||||||||| || | ||| |||| Sbjct 5397 CATCCAAAAGGAGTCGACCCTTCACTTGGT 5368 >seq86116 Length=13258 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||||||||| || || || || || || |||||| | || ||| ||| Sbjct 2705 ATGCAAATTTTTGTCAAGACCTTGACTGGGAAGACTATTACCTTGGAGGTTGAGAGCTCA 2646 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || || |||||| || || || ||| | || || || Sbjct 2645 -GACACAATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCA 2587 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| || ||||| ||||||||||| | | || ||||||||||||| Sbjct 2586 GCAGAGGCTTATTTTCGCTGGTAAGCAGCTGGAGGATGGGAGGACCCTGGCGGACTACAA 2527 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || || ||||||||||| ||||| Sbjct 2526 TATCCAGAAGGAGTCTACCCTGCAC 2502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || || || || || |||||||| ||| | ||| || ||| | Sbjct 2933 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATCACCCTTGAAGTTGAAAGCTCG 2874 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||||| ||||| || || | ||| || || Sbjct 2873 -GATACCATCGACAATGTTAAGGCGAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCA 2815 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | || | ||| || || ||||| ||||||| | || | || |||||||| Sbjct 2814 GCAGCGGTTGATCTTTGCTGGCAAGCAGCTTGAGGACGGGAGGACCCTTGCTGACTACAA 2755 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || |||||||| || | ||| |||| || | |||| ||||| Sbjct 2754 CATCCAGAAGGAGTCCACTCTACACTTGGTACTGCGTCTGCGTGGGGG 2707 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | || || ||||||||||| | ||| || | | Sbjct 3161 ATGCAAATTTTTGTGAAGACCCTTACCGGGAAAACCATTACTTTGGAAGTCGAAAGTTCC 3102 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||| || || || || | || || ||| Sbjct 3101 GATACAATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 3042 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || |||| ||| || || ||||| ||||| | ||| |||| ||||| ||| Sbjct 3041 CAAAGGCTCATTTTTGCTGGCAAGCAGCTCGAGGATGGACGAACCTTGGCCGACTATAAC 2982 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || | ||| |||||||| Sbjct 2981 ATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 2949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398232792963964