Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq86116 168 5e-37 seq109654 122 7e-23 seq115941 118 8e-22 seq97568 84.2 2e-11 >seq86116 Length=13258 Score = 168 bits (186), Expect = 5e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| ||||| ||||| |||||||| ||||| |||| ||||||| Sbjct 3630 ACGGAGCACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGACC 3689 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||||||| | |||| |||||||| || || || |||||||| || Sbjct 3690 ATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGGATACCCTCCTT 3749 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | ||||| || ||| || ||||| || || Sbjct 3750 GTCTTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGAT 3809 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || | ||||| ||||| |||||||| Sbjct 3810 AGTTTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 3845 Score = 150 bits (166), Expect = 1e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||||||||| |||||||||||||| |||| ||| || Sbjct 3174 ACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAATCGGCAAGGGTCCGGCC 3233 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| || ||||| | ||||| || ||||| || || ||||||||||| || Sbjct 3234 ATCCTCGAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTT 3293 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | |||||| | || | || || || ||| || ||||| || | Sbjct 3294 GTCCTG-AATCTTGGCCTTGACATTGTCAATGGTATCTGAGCTTTCCACCTCAAGGGTGA 3352 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | || |||||||| || ||||| Sbjct 3353 TGGTTTTCCCGGTGAGTGTCTTAACAAAAATTTGCAT 3389 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||||||||| || ||||| ||||| |||| || || Sbjct 3402 ACGGAGTACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCGGCAAGAGTACGGCC 3461 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || |||||||| | |||||||| ||||| || || || ||||| || || Sbjct 3462 GTCCTCAAGCTGCTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGTGGGATACCTTCCTT 3521 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||| | || | ||||| || ||| || || | || | Sbjct 3522 GTCTTG-AATCTTGGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGACCTCCAAGGTGA 3580 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| | |||||| ||||| || ||||| Sbjct 3581 TGGTTTTTCCAGTAAGGGTTTTGACAAAGATTTGCAT 3617 >seq109654 Length=28343 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 |||||||| ||||| ||||| || || || ||||| ||||| || | ||| || ||| Sbjct 18893 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCC 18952 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| || || || ||| | ||||| || ||||||||||| ||||| || || ||||| Sbjct 18953 TCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 19012 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 |||| || ||||| | || | || || || || || |||||||| || || Sbjct 19013 TGTATCTTAGCCTTGACGTTGTCAATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTC 19072 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || |||||||| Sbjct 19073 TTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 19104 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||||||||| || || || || || || ||||| || || ||| Sbjct 18194 CCTCCACGGAGACGAAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 18253 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || ||||| ||||| ||||| | || | | ||||| || || ||| Sbjct 18254 AGGGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 18313 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | ||| ||||| | || | ||||| || || || Sbjct 18314 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCGACC 18373 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || | |||||| |||||||||||||| Sbjct 18374 TCAAGGGTGATGGTCTTCCCGGTGAGGGTTTTCACAAATATCTGCAT 18420 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||||||| |||||||| || || || || || || |||||||| || || ||| Sbjct 17966 CCACCCCTCAAACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCA 18025 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || | || || || || | |||| | |||||| || || ||| Sbjct 18026 AGGGTACGGCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCTGGGGGA 18085 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || ||| || | || || | || | ||||| || ||| || Sbjct 18086 ATTCCCTCCTTGTCCTG-AATCTTAGCCTTAACGTTGTCGATTGTGTCTGAGCTTTCCAC 18144 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | ||| || ||||| |||||||| Sbjct 18145 CTCGAGGGTGATGGTCTTCCCTGTGAGGGTCTTGACAAAGATCTGCAT 18192 >seq115941 Length=36387 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| ||||| || || ||||||||||| || || | || | Sbjct 4449 ACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGCCAAAGTCCTTCC 4508 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||| ||||| | || || || ||||| ||||| || || |||||||| Sbjct 4509 ATCTTCCAACTGTTTCCCAGCGAAAATTAACCTCTGCTGGTCCGGTGGGATGCCCTCTTT 4568 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||||| |||||| | || | || || || || || || | ||| | Sbjct 4569 GTCTTG-AATTTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTGA 4627 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| ||||| |||||||| |||||||| Sbjct 4628 TGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 4664 >seq97568 Length=18938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | | || || | |||||| || || || ||||| |||||||||||||| Sbjct 7135 TCCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCCGC 7076 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || || ||| || | || || || ||| | |||||||| |||||||| || || Sbjct 7075 AAGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAGG 7016 Query 29679 AATACCCTCTTTGTCTTGTAA 29699 || || || || || || || Sbjct 7015 GATGCCTTCCTTATCCTGAAA 6995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384597243859116