Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023502.1 Length=109558 Score E Sequences producing significant alignments: (Bits) Value seq11461 84.2 2e-11 >seq11461 Length=1148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 174/258 (67%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 82352 GGCTCGATGGCCTACGGTGATTACAATGGCCCTGACAAGCCCGACAAGGGCCATGAGGGC 82411 |||| |||| | ||||| |||| |||||||||||||| |||||||||| ||| | Sbjct 521 GGCT-GATGCCGTACGGGAGCTACAGCGGCCCTGACAAGCCGAACAAGGGCCACGAGAAC 463 Query 82412 GGTTCCTGCAACAGAGGGCGGTGCCAGTCCTCTCCGGCCCTCTACTACAACCACGGCTCA 82471 || | |||||| | ||||||||| | ||||| | || |||||||| || || Sbjct 462 GGCGCGTGCAACCGTCAGCGGTGCCAAGCTGAACCGGCGCGCTGGTACAACCATGGGTCG 403 Query 82472 TTCTCGTGGTACTGCCTCGATTGCCGGAACCAGATCGCCCTCGACCCGGTCAACCGCAGA 82531 | ||||||||| ||| ||||| | | |||| | | ||||| || ||| || Sbjct 402 TATAGCTGGTACTGCGACGACTGCCGCCGCGACATCGGCTTTGACCCTGTAAACTTGAGC 343 Query 82532 AGCTGGCAGAAGGACTTCGAGCCCACGTGCCATCATCAGCAGTTCGAGACCCGCGCCGAG 82591 ||||| || | | |||| |||| |||| ||||||||||| |||| || Sbjct 342 CATTGGCAACGCGATTGGCAACCCAAGTGCGGCCATCCTCAGTTCGAGACGCGCGAGCAG 283 Query 82592 ATGGACAAGCGCAAGGCC 82609 |||| ||| ||||| Sbjct 282 GTGGATGCACGCGAGGCC 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 349894963077284