Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq129337 91.5 5e-14 seq129191 91.5 5e-14 seq125753 91.5 5e-14 seq120126 91.5 5e-14 seq112863 91.5 5e-14 seq108382 91.5 5e-14 seq107541 91.5 5e-14 seq96267 91.5 5e-14 seq96137 91.5 5e-14 seq93515 91.5 5e-14 seq92258 91.5 5e-14 seq91015 91.5 5e-14 seq76187 91.5 5e-14 seq64143 91.5 5e-14 seq41161 91.5 5e-14 seq74691 87.8 7e-13 seq129729 80.6 1e-10 >seq129337 Length=71990 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 12711 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 12652 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 12651 TGCTCTACCCCGC 12639 >seq129191 Length=72149 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 61360 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 61419 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 61420 TGCTCTACCCCGC 61432 >seq125753 Length=54816 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 3484 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 3543 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 3544 TGCTCTACCCCGC 3556 >seq120126 Length=41965 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 36252 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 36311 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 36312 TGCTCTACCCCGC 36324 >seq112863 Length=31416 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 23188 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 23129 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 23128 TGCTCTACCCCGC 23116 >seq108382 Length=26939 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 17368 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 17309 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 17308 TGCTCTACCCCGC 17296 >seq107541 Length=26167 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 12783 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 12842 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 12843 TGCTCTACCCCGC 12855 >seq96267 Length=18199 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 9404 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 9463 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 9464 TGCTCTACCCCGC 9476 >seq96137 Length=18086 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 2062 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 2003 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 2002 TGCTCTACCCCGC 1990 >seq93515 Length=16586 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 4298 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 4357 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 4358 TGCTCTACCCCGC 4370 >seq92258 Length=16090 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 5468 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 5409 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 5408 TGCTCTACCCCGC 5396 >seq91015 Length=15328 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 7096 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 7037 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 7036 TGCTCTACCCCGC 7024 >seq76187 Length=9250 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 7478 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 7537 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 7538 TGCTCTACCCCGC 7550 >seq64143 Length=5232 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 2279 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 2220 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 2219 TGCTCTACCCCGC 2207 >seq41161 Length=2698 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 1756 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 1815 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 1816 TGCTCTACCCCGC 1828 >seq74691 Length=8698 Score = 87.8 bits (96), Expect = 7e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 ||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 122 TTGCGGAAACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 181 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 182 TGCTCTACCCCGC 194 >seq129729 Length=77038 Score = 80.6 bits (88), Expect = 1e-10 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 50120 CGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACTGCTCTACT 50179 ||||||||||||||| | |||| ||| ||||||||| |||||||||| | ||||||||| Sbjct 66878 CGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGCTGCTCTACC 66937 Query 50180 CCGC 50183 |||| Sbjct 66938 CCGC 66941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181317510471912