Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023572.1 Length=42240 Score E Sequences producing significant alignments: (Bits) Value seq62642 89.7 1e-13 seq60391 82.4 2e-11 >seq62642 Length=4899 Score = 89.7 bits (98), Expect = 1e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 36953 GGCATCGACTGGGTGATCGTCGGCGGTGAATCCGGGCCCGGCGCCCGGCCAATGCACCCC 37012 |||||||||||||| |||||||| || || || ||| ||||| | || ||| |||| Sbjct 4812 GGCATCGACTGGGTCATCGTCGGTGGCGAGAGTGGCCCCCGCGCCAGACCGATGGACCCG 4753 Query 37013 GATTGGGCGCGAACGCTGCGCGACCAGTGCACGGTGGCCGGTGTGCCGTTCCTGTTCAAG 37072 || |||| || | | | ||||| ||| |||||||||||| | ||| | |||||| Sbjct 4752 GAGTGGGTCCGGGAGGTCAGGGACCAATGCGTCGTGGCCGGTGTGGCCTTCTTCTTCAAG 4693 Query 37073 CAGTGGGGAGCTTTCCGTCCGA 37094 || ||||| | ||||| |||| Sbjct 4692 CAATGGGGTGGATTCCGCCCGA 4671 >seq60391 Length=4507 Score = 82.4 bits (90), Expect = 2e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 36943 CGACCAGATCGGCATCGACTGGGTGATCGTCGGCGGTGAATCCGGGCCCGGCGCCCGGCC 37002 ||||| | ||||||| || |||||||||||||| || |||||| ||||||| || Sbjct 4244 CGACCTGTCCGGCATCCACCTCGTGATCGTCGGCGGCGAGAGCGGGCCGCGCGCCCGCCC 4185 Query 37003 AATGCACCCCGATTGGGCGCGAACGCTGCGCGACCAGTGCACGGTGGCCGGTGTGCCGTT 37062 | || |||||| |||| ||| | |||| ||||||||| | | || ||| | || Sbjct 4184 ACTGAACCCCGCGTGGGTGCGGTCTATGCGTGACCAGTGCGCAGCACAGGGCGTGGCCTT 4125 Query 37063 CCTGTTCAAGCAGTGGGG 37080 | | |||||||| ||||| Sbjct 4124 CTTCTTCAAGCAATGGGG 4107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134833951418224