Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023590.1 Length=43050 Score E Sequences producing significant alignments: (Bits) Value seq4281 86.0 2e-12 >seq4281 Length=1049 Score = 86.0 bits (94), Expect = 2e-12 Identities = 176/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 19817 CGCAGCTTCAAGCGTAAGCGGCAATAAATCAAGCTCGCCGTTAATAATCCAATCGTAATC 19876 |||||| || | || ||||||| || || || ||||| || || ||||| |||||||| Sbjct 521 CGCAGCATCGAATGTGAGCGGCACCAAGTCCAGGTCGCCATTGATGATCCAGTCGTAATC 462 Query 19877 CTCAATCTGTACGAAATCGTAATTCGGATAAATCCAATAATTGATAGGAAAGTTAATAAT 19936 ||| ||||| ||||| ||||||||||| |||| || | || || |||| | | Sbjct 461 CTCGATCTGCACGAAGTCGTAATTCGGCGCCTTCCAGTATTCGACCGGGAAGT---TCAG 405 Query 19937 CCGC---AAGAACTCCGACGTCGGGTTCATAATCTGCGGGGTGAAGAATAACAGCGTCGC 19993 |||| | ||| || || ||| ||||| ||||||||||| | |||||| || Sbjct 404 CCGCTTTGTCAGCTCACTCGATGGCGACATGATCTGAGGGGTGAAGAACAGCAGCGTGGC 345 Query 19994 TTCACTG-GTCGGATAA-GCTTCTTTGACTCTGTCGCGAATGTAGTTAGTCGACTGCCCT 20051 | || |||| || | | ||||| ||||||| || | || || ||||| || Sbjct 344 --CTGTGCATCGGGGAACTCGGCCTTGACGATGTCGCGCATCTGATTGGTTGACTGGCCC 287 Query 20052 AACTTATCACCCAACCA 20068 | |||| | | || ||| Sbjct 286 AGCTTAGCGCACAGCCA 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137421873806944