Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq58572 98.7 1e-15 >seq58572 Length=4186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/242 (70%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919 |||||||| ||||||||||||| ||||| | ||||| | ||| ||| ||| | Sbjct 3949 CCAAAACCGCCTGCGCCGCGTTGGGTTTC---ATCAAACTCTTGTACCAGTTCGAAGTGC 4005 Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCCACGAGAGATTTTAAAC 99979 || ||||||||| | | | || ||||| || ||||| || ||| || ||| Sbjct 4006 GCCTGCACCACCGGCACCAGTACCAACTGGGCAATGCGTTCGCCGACAGCGATGTTGAAC 4065 Query 99980 GCAGGTCCCTGAGTGTTACGGTTCCACAGTGAAACCATCAGCTGCCCGTTGTAGTCTGCA 100039 || ||| ||| | ||||||||| ||| |||||||| | || | |||||| | | Sbjct 4066 GC-GGT--CTG---GCCACGGTTCCAGCATGACACCATCAGTTCGCCCTGGTAGTCCGAA 4119 Query 100040 TCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGCGA 100099 || || | ||| |||||| |||| ||||| |||||||| || ||||| || ||||| Sbjct 4120 TCGATCAGGCCGACCAGGTTGCCCAACACGATGCCGTGTTTATGGCCCAGGCCAGAGCGC 4179 Query 100100 GG 100101 || Sbjct 4180 GG 4181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 697400024867040