Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023714.1 Length=153882 Score E Sequences producing significant alignments: (Bits) Value seq25666 113 4e-20 >seq25666 Length=1659 Score = 113 bits (124), Expect = 4e-20 Identities = 281/421 (67%), Gaps = 12/421 (3%) Strand=Plus/Plus Query 128017 CTGCACCGGTTCCTGACCCTGGGCACCGACGGCGGCACCTACTACACCAACGCTCGGGAC 128076 ||| | || || |||| |||||| ||||| |||||||| |||||||| || || | Sbjct 326 CTGGATCGCTTTCTGATCCTGGGTACCGAGGGCGGCACATACTACACTGGCGAGCGCAAG 385 Query 128077 CTGACCAAGGACAACGCCGAGGTCGTCCTGCGTATGGTCGCCGACAAGGGGCTGTACACG 128136 || |||||||| ||||| || || ||||| ||||| ||| | || || | Sbjct 386 CTCACCAAGGAGAACGCGCAGAACGCGCTGCGCCTGGTCCGCGAGGATGGCGTGCGTGTG 445 Query 128137 GTCAGCCAGATCGTCGAGATCTCCACGGCGGGCCGCGCGCCGAAGAACAAGCAGGCGCTG 128196 || | || | || |||||| | | || || || || |||||| | | || ||| Sbjct 446 GTGAACCGTGTTGTGGAGATCAGCGACTCCGGTCGTGCTCCCAAGAACGATCCTGCTCTG 505 Query 128197 TTCGCGCTGGCCCTGGCCGCATCGCACGGTGACGACGT---CACTCGTGCTGCTGCGCTG 128253 || | |||||| |||| ||| | |||||| || ||| ||| |||||| | Sbjct 506 TTTGTGCTGGCAATGGCT---TCGGCTGCTGACGATGTGAACACCCGTCGTGCTGCATTC 562 Query 128254 GCCGCGCTGCCGCAGGTCGCACGCACGTCG--ACGCACCTGTTCGAGTTC-CTCAACTAC 128310 | |||||||| |||| || || | ||| |||||||||||| | | | || | | | Sbjct 563 GAGGCGCTGCCCAAGGTAGCTCGTA--TCGGAACGCACCTGTTCCACTACGCTGCA-TTC 619 Query 128311 GCCCAGCAGTTCCGTGGCTGGGGCAAGGGTCTGCAGAAGGCCGTGCTCCGGTGGTACGTG 128370 | || |||||||||| |||||| | | ||| ||||| ||| | |||||| | Sbjct 620 GTTGAGGAGTTCCGTGGTTGGGGCCGCGCTTTGCGCAAGGCTGTGGCCAACTGGTACCTC 679 Query 128371 GACAAGCCGGTCGACCGCGCTGCTTACCAGATGGTCAAGTACCGCCAGCGTGAGGGCTGG 128430 || || || |||||| || ||||| || |||||| || |||||||| || ||| Sbjct 680 AACCAGGATGTTGACCGCTTGGCCAACCAGGTGATCAAGTTCCAGCAGCGTGATGGTTGG 739 Query 128431 A 128431 | Sbjct 740 A 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491479185088320