Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq42969 91.5 5e-13 seq26594 86.0 2e-11 >seq42969 Length=2761 Score = 91.5 bits (100), Expect = 5e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 188959 GGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATT 189018 || ||||| || ||||| ||| | || || ||| | | || || || | | | || || Sbjct 1754 GGTATTGTCTACATCGACGAAATCGACAAGATTTCACGCAAGTCGGACAACCCGTCGATC 1695 Query 189019 ACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACA 189078 ||||| || || || || ||||| || ||||| || | || ||| | || ||||| || Sbjct 1694 ACCCGGGACGTTTCCGGTGAAGGCGTGCAGCAGGCCCTGTTGAAACTGATCGAAGGCACG 1635 Query 189079 GTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATA 189138 || || || || || ||||||||||| || || || || || ||| | ||| | | Sbjct 1634 GTCGCTTCCGTACCGCCACAAGGTGGTCGCAAGCATCCGCAGCAGGAATTCCTTCAGGTT 1575 Query 189139 GATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAA 189191 ||||| ||| ||| |||| || ||||| ||||| ||||| ||||| Sbjct 1574 GATACGCGTAACATCCTGTTCATCTGCGGTGGTGCGTTCTCCGGTCTGGAAAA 1522 >seq26594 Length=1759 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46585 TGTTTTTAGACGAAATACATCGTTTCAATAAAGGACAGCAAGATTCGTTATTACCTTATG 46644 ||||| | |||||| | |||||||||||||| |||||| ||| |||| |||| |||| Sbjct 1418 TGTTTGTCGACGAAGTGCATCGTTTCAATAAGTCACAGCAGGATGCGTTTCTACCCTATG 1477 Query 46645 TTGAAGATGGAACAATTACGTTAATTGGTGCAACAACTGAAAATCCATTTTTTGAAATTA 46704 | ||||||||||| | | || || || || || || ||||| || | |||||| | | Sbjct 1478 TGGAAGATGGAACGCTGATTTTTATCGGCGCCACCACGGAAAACCCTTCGTTTGAATTGA 1537 Query 46705 AC 46706 || Sbjct 1538 AC 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1589208372872448