Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023725.1 Length=156646 Score E Sequences producing significant alignments: (Bits) Value seq25666 114 1e-20 >seq25666 Length=1659 Score = 114 bits (126), Expect = 1e-20 Identities = 279/419 (67%), Gaps = 8/419 (2%) Strand=Plus/Plus Query 130491 CTGCATCGGTTCCTGACCCTGGGCACCGACGGCGGCACCTACTACACCAACGCTCGGGAC 130550 ||| |||| || |||| |||||| ||||| |||||||| |||||||| || || | Sbjct 326 CTGGATCGCTTTCTGATCCTGGGTACCGAGGGCGGCACATACTACACTGGCGAGCGCAAG 385 Query 130551 CTGACCAAGGACAACGCCGAGGTCGTCCTGCGTATGGTCGCCGACAAGGGTCTGTACACG 130610 || |||||||| ||||| || || ||||| ||||| ||| | || || | Sbjct 386 CTCACCAAGGAGAACGCGCAGAACGCGCTGCGCCTGGTCCGCGAGGATGGCGTGCGTGTG 445 Query 130611 GTCAGCCAGATCGTCGAGATCTCCACGGCGGGCCGCGCGCCGAAGAACAAGCAGGCGCTG 130670 || | || | || |||||| | | || || || || |||||| | | || ||| Sbjct 446 GTGAACCGTGTTGTGGAGATCAGCGACTCCGGTCGTGCTCCCAAGAACGATCCTGCTCTG 505 Query 130671 TTCGCGCTGGCCCTGGCCGCATCGCACGGTGACGACGT---CACTCGTGCTGCTGCGCTG 130727 || | |||||| |||| ||| | |||||| || ||| ||| |||||| | Sbjct 506 TTTGTGCTGGCAATGGCT---TCGGCTGCTGACGATGTGAACACCCGTCGTGCTGCATTC 562 Query 130728 GCCGCGCTGCCGCAGGTCGCACGCACGGCGACGCACCTGTTCGAGTTC-CTCAACTACGC 130786 | |||||||| |||| || || | | |||||||||||| | | | || | | || Sbjct 563 GAGGCGCTGCCCAAGGTAGCTCGTATCGGAACGCACCTGTTCCACTACGCTGCA-TTCGT 621 Query 130787 CCAGCAGTTCCGTGGCTGGGGCAAGGGTCTGCAGAAGGCCGTGCTCCGGTGGTACGCGGA 130846 || |||||||||| |||||| | | ||| ||||| ||| | |||||| | Sbjct 622 TGAGGAGTTCCGTGGTTGGGGCCGCGCTTTGCGCAAGGCTGTGGCCAACTGGTACCTCAA 681 Query 130847 CAAGCCGGTCGACCGTTCTGCTTACCAGATGGTCAAGTACCGCCAGCGTGAAGGCTGGA 130905 | || || ||||| | || ||||| || |||||| || |||||||| || |||| Sbjct 682 CCAGGATGTTGACCGCTTGGCCAACCAGGTGATCAAGTTCCAGCAGCGTGATGGTTGGA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500309338541760