Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023734.1 Length=35725 Score E Sequences producing significant alignments: (Bits) Value seq124121 105 2e-18 >seq124121 Length=49848 Score = 105 bits (116), Expect = 2e-18 Identities = 286/435 (66%), Gaps = 2/435 (0%) Strand=Plus/Plus Query 15119 AACGCTGGCAAGACGATGGTACTTGAGCATGGCATGAAGTATAACGGCGTGACCATGAAC 15178 ||||| || || || ||||| || || ||| ||||||| | ||| | ||||||||| Sbjct 19869 AACGCCGGTAAAACCATGGTGCTGGAAGCGGGCCTGAAGTACCAAGGCATCACCATGAAC 19928 Query 15179 CCAGAAGCGGCGCAAATGCTTGAGACGCGATCCTTTGAGATTGAGGAAATCTGTCGTTGG 15238 || ||||| ||||| ||||| ||||| || |||| | | || || ||||| || ||| Sbjct 19929 CCCGAAGCCGCGCAGATGCTGGAGACCCGCGCCTTCAATGTCGAAGAGATCTGCCGCTGG 19988 Query 15239 TTTCGCGTATCGCCAATTATGATTGGGCACTTCGATAAGCAAAGCTCATGGGCCGCCTCT 15298 ||||| || |||| | ||| | |||||| | ||||| ||| |||||||| | Sbjct 19989 TTTCGTGTGCCGCCGTTCATGGTCGGGCACATGACCAAGCAGAGCAGTTGGGCCGCGAGT 20048 Query 15299 GCTGAAGCGCAAGACTTACACTTTTTGAAATACACATTTAGACCGCTGCTAGTCAATATT 15358 | ||||| ||| || | || || | | ||| | | ||| || | || ||||| Sbjct 20049 GTCGAAGCACAAAACCTGCATTTCCTCACCAACAGCCTGCGTCCGTTGTTGGTGAATATC 20108 Query 15359 GAGCAAGAGATTTTACGCTGTCTTATCGGAAAAATTGATAGCGACAAGTAT-TACGTTGA 15417 || || || || ||||| || |||| | | || || | | || | ||| || Sbjct 20109 GAACAGGAAATCAATCGCTGCCTGATCGACGAGAACGA-CGCAGAAGGGATCTTCGTCGA 20167 Query 15418 GTTCAATGTCGAAGGCTTACTACGTGCAGACAGTAAAACGCGCTCTGAGTACTATTCGTC 15477 |||| || ||||| | || ||||| ||||| ||| | | |||| Sbjct 20168 GTTCGCCGTAGAAGGTCTGCTGCGTGCTGACAGCGCCGGTCGCGCCAGTTTCTATATCAG 20227 Query 15478 TGGCCTGAATAACGGCTGGATAAATCGTGACGAAGTCCGGTCTAAAGAGAATATGCCGCC 15537 ||| |||| | |||||||||| || || |||||||||| | || || | ||||| Sbjct 20228 TGGTCTGACTCACGGCTGGATCAACCGCAACGAAGTCCGCCGTTTTGAAAACCTACCGCC 20287 Query 15538 AATTGACGGCGGTGA 15552 ||| |||||||| Sbjct 20288 AATCCCTGGCGGTGA 20302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114018748501544