Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq115941 150 4e-31 seq86116 131 3e-25 seq109654 118 2e-21 seq98793 89.7 1e-12 seq97568 84.2 4e-11 >seq115941 Length=36387 Score = 150 bits (166), Expect = 4e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||| || ||||| || || || ||||| || ||||| | || | || || Sbjct 4905 ACGAAGCACTAGATGGAGAGTGGACTCCTTTTGTATGTTGTAATCGGCAAGTGTCCTTCC 4964 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || ||||| ||||| |||||||| ||||| || || ||||| || || || ||||| Sbjct 4965 GTCCTCGAGTTGCTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCCTT 5024 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 |||||| |||||||| || ||||| ||||| ||||| || | || || ||||| |||| Sbjct 5025 ATCTTGGATCTTTGCCTTGACATTGTCAATAGTATC-GGAGCTCTCAACCTCCAATGTTA 5083 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || | ||||| ||||| |||||||| Sbjct 5084 TTGTTTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 5120 Score = 147 bits (162), Expect = 4e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || ||||| || ||||| || || ||||||| Sbjct 5120 TACCACCACGAAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAG 5179 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || || || || || |||||||| ||||| || | || || ||||| | Sbjct 5180 CGAGAGTTCTCCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGG 5239 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| ||||||||||| ||||| ||||| ||||| || || || | || Sbjct 5240 GGATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATGGTGTC-CGAGCTCTCC 5298 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||||||||| || || || || | || || ||||| || ||||| Sbjct 5299 ACCTCCAAAGTTATGGTTTTTCCAGTGAGGGTTTTGACAAAGATTTGCAT 5348 Score = 114 bits (126), Expect = 3e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| ||||| || || || || || || || || || || | Sbjct 5348 TACCTCCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTG 5407 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || ||||| |||||||| ||||| | || || || ||||| | Sbjct 5408 CGAGTGTCCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGG 5467 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||||||||||||||| ||||| || || || || || || || | || Sbjct 5468 GAATGCCCTCCTTATCTTGAATCTTAGCTTTCACGTTGTCGATGGTGTC-CGAGCTCTCG 5526 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || ||||| || || | || || || || || ||||| Sbjct 5527 ACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 5576 >seq86116 Length=13258 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || ||||| ||||| || || ||||| || || || |||| Sbjct 2707 CCCCCACGCAGACGCAGTACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCA 2766 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || ||||| || || || || ||||||||||| | | || || ||||| || Sbjct 2767 AGGGTCCTCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGG 2826 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||||||||| ||||| || || ||||| || || ||||| ||| ||| Sbjct 2827 ATACCCTCCTTATCTTGGATCTTCGCCTTAACATTGTCGATGGTATCCGAGCTTTCAACT 2886 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||| ||||| ||||| || ||||| Sbjct 2887 TCAAGGGTGATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCAT 2933 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || || || || ||||| || ||||| || | | ||| || Sbjct 2946 ACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCGGCCAAGGTTCGTCC 3005 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || |||||||| || || ||||| || || || || || || ||||| Sbjct 3006 ATCCTCGAGCTGCTTGCCAGCAAAAATGAGCCTTTGCTGGTCAGGCGGGATACCCTCCTT 3065 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| ||||| ||||| ||||| | ||| ||||||||||| || Sbjct 3066 GTCCTGGATCTTAGCTTTCACATTGTCAATTGTATCGGAACTTTCGACTTCCAAAGTAAT 3125 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | ||||| ||||| || ||||| Sbjct 3126 GGTTTTCCCGGTAAGGGTCTTCACAAAAATTTGCAT 3161 Score = 123 bits (136), Expect = 5e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || ||||||||||| || |||||||| | || | | || Sbjct 3174 ACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAATCGGCAAGGGTCCGGCC 3233 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || ||||| ||||| | || || || ||||| || || || ||||| Sbjct 3234 ATCCTCGAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTT 3293 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG-GTTCTACTTCCAAAGTTA 82773 || |||||||| || || ||||| ||||| ||||| | || ||| || || | || | Sbjct 3294 GTCCTGAATCTTGGCCTTGACATTGTCAATGGTATC-TGAGCTTTCCACCTCAAGGGTGA 3352 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || | ||||| ||||| || ||||| Sbjct 3353 TGGTTTTCCCGGTGAGTGTCTTAACAAAAATTTGCAT 3389 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || ||||| || |||||||| || || ||||||| || | | ||| Sbjct 3630 ACGGAGCACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGACC 3689 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || ||||||||||| || ||||| || |||||||| || || ||||| Sbjct 3690 ATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGGATACCCTCCTT 3749 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || ||||| || || || || ||| || || | || || Sbjct 3750 GTCTTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGAT 3809 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | || || ||||| |||||||| Sbjct 3810 AGTTTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 3845 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || ||||||||||| || || ||||| | Sbjct 3389 TACCACCACGGAGACGGAGTACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCGG 3448 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||||| || || || || ||||| || || | ||| || || ||||| | Sbjct 3449 CAAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGTG 3508 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || || || || ||||| || || ||| | Sbjct 3509 GGATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGA 3568 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || || || || || | || || ||||| || ||||| Sbjct 3569 CCTCCAAGGTGATGGTTTTTCCAGTAAGGGTTTTGACAAAGATTTGCAT 3617 >seq109654 Length=28343 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || || || | || ||| || ||||| || || Sbjct 18674 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCTTCAAGCTGC 18733 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| |||||||| | || || || ||||| || ||||||||||| || || ||||| Sbjct 18734 TTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 18793 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| || || || || || || | ||| ||||| | || |||||||| || ||| Sbjct 18794 GCTTTGACGTTGTCGATGGTGTCGGATGATTCGACTTCGAGCGTGATCGTCTTTCCGGTC 18853 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || |||||||| Sbjct 18854 AAAGTCTTAACGAAGATCTGCAT 18876 Score = 118 bits (130), Expect = 2e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || ||||| ||||| ||||| | || |||| || ||||| || || Sbjct 19130 TGAAGAGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTTCTGCCATCTTCGAGCTGC 19189 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||| ||||| || || || || || ||||| || || ||||| ||||||||||| Sbjct 19190 TTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCCTCCTTGTCTTGAATCTTG 19249 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| || || || || || | || || || | ||| || ||||| || || Sbjct 19250 GCCTTAACATTGTCGATGGTGTC-GGAGCTCTCGACCTCGAGAGTGATGGTCTTACCGGT 19308 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 19309 TAGGGTTTTGACGAAGATCTGCAT 19332 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || || || ||||| || || ||||| || || || || | Sbjct 18192 TACCTCCACGGAGACGAAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 18251 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || ||||||||||| ||||| || | || || ||||| | Sbjct 18252 CAAGGGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGGG 18311 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | ||||| ||||| || || || || || || || || || || || || || | || Sbjct 18312 GAATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTC-GGAGCTCTCG 18370 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || ||||| || || | || || |||||||||||||| Sbjct 18371 ACCTCAAGGGTGATGGTCTTCCCGGTGAGGGTTTTCACAAATATCTGCAT 18420 >seq98793 Length=19735 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | | || ||| | || ||||| || || || || || |||||||||| Sbjct 5362 CCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 5421 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| || || || | || ||||| |||||||| | ||| || ||||| ||||| Sbjct 5422 AGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAGGG 5481 Query 82704 ATTCCTTCCTTATCTTGAA 82722 || ||||||||||| |||| Sbjct 5482 ATGCCTTCCTTATCCTGAA 5500 >seq97568 Length=18938 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | | || ||| | || ||||| || || || || || |||||||| | Sbjct 7134 CCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCCGCA 7075 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| || || || | || ||||| |||||||| | ||| || ||||| ||||| Sbjct 7074 AGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAGGG 7015 Query 82704 ATTCCTTCCTTATCTTGAA 82722 || ||||||||||| |||| Sbjct 7014 ATGCCTTCCTTATCCTGAA 6996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980160696829364