Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq109206 89.7 1e-12 seq108749 84.2 5e-11 >seq109206 Length=27697 Score = 89.7 bits (98), Expect = 1e-12 Identities = 269/412 (65%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || || || || || || || || ||||| || || ||||| || || |||||||| Sbjct 8151 GCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTA 8092 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 ||||| || || |||||||| || ||| | || || || | || || ||| |||||||| Sbjct 8091 AAGAAACGCGGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGATATCGCGAGATGAA 8032 Query 131987 GCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATT-TGCTGATAAACTTGAT-G 132044 | || || || || || || || || | || || || || ||| | Sbjct 8031 GGGTTACACTGCGATTTCGCGTGTTTG--CTTTACACGCTTCTGAAGAAGAAGCTGAGCG 7974 Query 132045 AAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAG 132104 | | | | | | || |||| || ||||||||||||| |||||| | | Sbjct 7973 AGGAGCGAGTCAGGGGAATCATCCGCGATGCCGTTGATATCGAGAGGGAGTTCGTCTGTG 7914 Query 132105 AAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAAT 132164 | ||| ||||||| ||| | || ||||| | ||| |||| |||| || || | Sbjct 7913 ATGCTCTGCCTTGTGCGTTGGTGGGTATGAACGGTGATCTTATGTGCAAGTATATCGAGT 7854 Query 132165 TCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACC 132224 |||| |||||||| || || | | || || ||||||| || || |||| |||| Sbjct 7853 TCGTGGCTGATCGATTGATGGATGCGTTGGGTTACGCCAAGATCTACAATGCCCAGAACC 7794 Query 132225 CCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 ||| | ||||||||| || ||| | | ||||| || |||||||| || Sbjct 7793 CCTTTGATTGGATGGAGCTGATATCGTTGCAGGGTAAGACCAACTTCTTTGA 7742 >seq108749 Length=27216 Score = 84.2 bits (92), Expect = 5e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 279899 AAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTA 279958 ||||| | || ||| |||||| || || || ||||| ||| ||||||||||| Sbjct 1272 AAGATCCTCTTTTGTTCTTTCAAGAGGAACTTTGTAAAAGAAGCAAAGGTTGCTCAGTTT 1331 Query 279959 GCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCT 280018 | |||||||| || |||||| ||| ||||| || ||||| ||| |||| ||| | Sbjct 1332 TCTGGTTATGTATCTGAACATTCAGCCTATCACCATGGTGAGGCGAGTCTTGCCGGTACC 1391 Query 280019 ATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCA-CCAAA 280077 || | || | || || |||| | ||| | || ||| | ||||| || || ||||| Sbjct 1392 ATCATTGGAATGGCACAGGATTATGTGGGTAGTAATAACATCAATCT-TTTACAGCCAAA 1450 Query 280078 TGGTCAATTTGGTTCTCGTA 280097 |||||| ||||| | |||| Sbjct 1451 TGGTCAGTTTGGCACACGTA 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184798364777436