Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_024771.1 Length=151601 Score E Sequences producing significant alignments: (Bits) Value seq71751 93.3 4e-14 >seq71751 Length=7503 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/205 (72%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 107340 GTCGTGTTGATGAGGAGCACCCCCTGGAGGGCCCACTTTTCCAGGTAGCCGTGGGCGGGG 107399 || ||||||| | ||||| |||||| |||||| ||| |||||||||||| ||| Sbjct 2697 GTGGTGTTGAGCATCAGCACGCCCTGGTCGGCCCAGCTTTGCAGGTAGCCGTGATTAGGG 2756 Query 107400 AGG-CGAAATGCCGGGTAGGTCTTTTGCACCGCCGCGTAGATGTTGCGCAGGCTTGGGGG 107458 | | ||| | || | | ||| || | ||||| ||| ||| || || Sbjct 2757 ATGTCGATGTTAAGG-TCGCGCTTGAGCTCTTTA---TAGATATTGACCAGCGACGGCGG 2812 Query 107459 AACTGGCACCCCCTTTCGCACGCTGAAAGC-CAGCCCGTGCGCCTGGCCGGGGCCGTGGT 107517 ||||||| ||| | |||| | ||||| ||| ||||| ||||||||||||||||||| Sbjct 2813 CGCTGGCACGCCCGGTTGCAC-CGAAAAGCACAGGCCGTGGGCCTGGCCGGGGCCGTGGT 2871 Query 107518 AGGGGTCCTGGCCGACGATCACAAC 107542 ||||||||||||||| |||||| || Sbjct 2872 AGGGGTCCTGGCCGAGGATCACGAC 2896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 484192072198560