Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq13017 136 1e-27 >seq13017 Length=1175 Score = 136 bits (150), Expect = 1e-27 Identities = 368/553 (67%), Gaps = 20/553 (4%) Strand=Plus/Plus Query 18003 CTCTTCGCGCTTGTCGATGCCCTGGTAGCCGGCATCGCCGAATACGTCGGCCTCCTTACC 18062 |||||||||| | |||| || ||| |||||||| | | ||| || || | || Sbjct 420 CTCTTCGCGCCTTTCGACACCGGTGTAACCGGCATCTGCATACACGGCGTTTTCTTCGCC 479 Query 18063 GTGCACCAACGCATGCGCTTGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCAGCACGGT 18122 |||| || || | | ||||| || ||| || ||||| || ||||| | ||| Sbjct 480 ATGCAGCAGTTCAGCCACCTGCGTGACATCGGCCACATTGGCAGCGGTGCCATGGACGTG 539 Query 18123 ATGCACCAGCCCCGAGTCCGCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTG 18182 ||||||||| || || || |||| | || |||||||| ||||| ||||| |||| Sbjct 540 ATGCACCAGGCCGGACTCGACATCGGCACCGATGTGCGCCTTCATCCCGAAGAAATACTG 599 Query 18183 GTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCGCGCTTGCCGCTGCCATTCTTGGTCGA 18242 |||||||||||||||||||||||||| || |||||||| ||| |||||||| Sbjct 600 ACCGCCTTTCTTGGTCTGGTGCATCTCGGGATCACGCTTGCCTTCTTTATTTTTGGTCGA 659 Query 18243 GCTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCCCTCTTTGAGCA--GGTAGCCC 18300 |||||| || ||| | | ||| ||||| | |||| ||| | ||| | || || Sbjct 660 GCTGGGGGCATGAATAATGGTGGCATCGACGATGGTGC---CTTGGCGCAGCGACAGGCC 716 Query 18301 TTCGCACTG-AGTTGCGCGTTGACCGTCTGCAGAAATTGCTCG-GCCAGTTGGTGTCGCT 18358 || ||| || | | |||| | | ||| ||||| | || || || || || Sbjct 717 TTTTTCCTGCAGATAACCATTGA-TGACCGCAAGGATTGCCGGTGCGAGCTGATGCTTCT 775 Query 18359 CCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCG---GCTTATGCCTC 18415 ||||||||||||| ||| || || || || || | | | ||| | || | Sbjct 776 CCAGCAAGTGCCGGAAGTTCATGATCGTGGTGTCTTCGGGGATTGGCGCGCTCA-GCGT- 833 Query 18416 CCAGCCCCGCGAATTGCCGATACAACGGC---ACGTCGTACAGCGCCTCTTCCATCGCCA 18472 ||| ||||| || || || ||| | ||||| ||||| |||||||| ||| Sbjct 834 -CAGGAGTGCGAACTGGCG---CATGGGCGTGATTTCGTAGAGCGCTTCTTCCATGGCCG 889 Query 18473 CGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAA 18532 ||| |||| |||||| | ||||| | |||||||||||||| ||||| | ||| Sbjct 890 GGTCGCTCAGGGAGAACCAGTTCTGCAACAGATGGATGCGCAGCATGGTTTCCAGAGGAT 949 Query 18533 ACGGCTTCCGACC 18545 | || || | ||| Sbjct 950 AGGGTTTTCTACC 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127683617707168