Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq109654 114 8e-21 seq86116 102 5e-17 seq113932 93.3 3e-14 seq106905 93.3 3e-14 seq97232 93.3 3e-14 seq86460 93.3 3e-14 seq115941 91.5 1e-13 seq64237 89.7 3e-13 >seq109654 Length=28343 Score = 114 bits (126), Expect = 8e-21 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 || ||||| ||| || ||| ||| || || |||||||| |||| ||| || || | || Sbjct 18664 TAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATC 18723 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || | || ||||||||||| ||||| | |||||| ||| | || | ||||| ||||| Sbjct 18724 TTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTC 18783 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715 || || | || || | ||| | ||||||| |||||| || || | |||||||| Sbjct 18784 CTGGATCTT-GGCTTTGACGTTGTCGATGGTGTCGGATGATTCGACTTCGAGCGTGATCG 18842 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || || |||||||||||| Sbjct 18843 TCTTTCCGGTCAAAGTCTTAACGAAGATCTGCATA 18877 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | |||||| || || || ||| || || |||||||| || | Sbjct 17966 CCACCCCTCAAACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCA 18025 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || |||||||| || |||| ||| ||||| ||| | || Sbjct 18026 AGGGTACGGCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCTGGGGGA 18085 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | || || ||||| ||| || || ||| | ||| | ||||| ||| ||| Sbjct 18086 ATTCCCTCCTTGTCCTGAATCTTAGCCTT-AACGTTGTCGATTGTGTC---TGAGCTTTC 18141 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | ||||| || || ||||| | || || ||||||||||||||| Sbjct 18142 CACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTCTTGACAAAGATCTGCATA 18193 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || || ||| ||| || || ||||||||||| | ||| || ||| | Sbjct 18433 ACGAAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTACGTCC 18492 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | || |||||||| || |||| | |||||| ||| | || | ||||| || Sbjct 18493 GTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCCTT 18552 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | || | ||| | ||||||| || || || |||| |||| Sbjct 18553 GTCCTGGATCTT-AGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGA 18611 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || || || |||||||||||| Sbjct 18612 TGGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCATA 18649 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || ||||||||||||| ||| || || | || || Sbjct 18895 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCCTC 18954 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || ||||||||||| ||||| | ||||||||| | || | ||||| ||||| Sbjct 18955 GAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTG 19014 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | | || | ||| | ||| ||| || || || |||| ||||| || | Sbjct 19015 TATCTT-AGCCTTGACGTTGTCAATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCT 19073 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || |||||||||||| Sbjct 19074 TTCCGGTCAAGGTCTTGACGAAGATCTGCATA 19105 >seq86116 Length=13258 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| |||||| |||||| || ||||||||||| | Sbjct 3619 CCACCACGGAGACGGAGCACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCA 3678 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || || ||||| |||| | ||||| ||| | || Sbjct 3679 AGGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGG 3738 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || | | |||| || | ||||||| |||||| Sbjct 3739 ATACCCTCCTTGTCTTGGATCTT-GGCCTTGACATTATCGATGGTGTCGGAGCTTTCCAC 3797 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | ||||| |||||||||||||| Sbjct 3798 CTCAAGGGTGATAGTTTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 3845 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| ||||| || ||||||||||||| Sbjct 3390 ACCACCACGGAGACGGAGTACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCGGC 3449 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | || || || || |||||||| | |||||| ||| | || Sbjct 3450 AAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 3509 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||| || | | || | ||| | |||||| ||| | Sbjct 3510 GATACCTTCCTTGTCTTGAATCTT-GGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGA 3568 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 3569 CCTCCAAGGTGATGGTTTTTCCAGTAAGGGTTTTGACAAAGATTTGCAT 3617 >seq113932 Length=32622 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | |||||| || ||||| ||| || || ||||||||||| | Sbjct 27640 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 27581 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| || || | ||||||||| || | || Sbjct 27580 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 27521 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | ||||||| || || || Sbjct 27520 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 27462 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 27461 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 27414 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | |||||| || ||||| ||| || || ||||||||||| | Sbjct 19559 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 19500 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| || || | ||||||||| || | || Sbjct 19499 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 19440 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | |||||| || || || Sbjct 19439 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCAATGGTGTCAGAAGACTCAAC 19381 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 19380 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 19333 >seq106905 Length=25706 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | |||||| || ||||| ||| || || ||||||||||| | Sbjct 9550 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 9491 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| || || | ||||||||| || | || Sbjct 9490 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 9431 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | ||||||| || || || Sbjct 9430 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 9372 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 9371 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 9324 >seq97232 Length=18783 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | |||||| || ||||| ||| || || ||||||||||| | Sbjct 12288 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 12347 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| || || | ||||||||| || | || Sbjct 12348 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 12407 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | ||||||| || || || Sbjct 12408 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 12466 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 12467 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 12514 >seq86460 Length=13305 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | |||||| || ||||| ||| || || ||||||||||| | Sbjct 12086 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 12027 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| || || | ||||||||| || | || Sbjct 12026 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 11967 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | ||||||| || || || Sbjct 11966 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 11908 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 11907 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 11860 >seq115941 Length=36387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||| | ||| |||||| ||| ||||||||||||||||||| Sbjct 4894 CCACCACGGAGACGAAGCACTAGATGGAGAGTGGACTCCTTTTGTATGTTGTAATCGGCA 4953 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | |||| || | ||| ||||||||||| || | | |||||| ||| | || Sbjct 4954 AGTGTCCTTCCGTCCTCGAGTTGCTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGG 5013 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || || || || || || | |||| ||| | || ||| || || Sbjct 5014 ATACCCTCCTTATCTTGGATCTT-TGCCTTGACATTGTCAATAGTATCGGAGCTCTCAAC 5072 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || || | || || ||||| ||||||||| Sbjct 5073 CTCCAATGTTATTGTTTTCCCGGTAAGGGTCTTAACAAAAATCTGCATA 5121 >seq64237 Length=5233 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | |||||| || ||||| ||| || || ||||||||||| | Sbjct 3090 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 3149 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| || || | ||||||||| || | || Sbjct 3150 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 3209 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | |||||| || || || Sbjct 3210 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCAGAAGACTCAAC 3268 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 3269 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 3316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328173290545920