Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq58005 116 8e-21 >seq58005 Length=4068 Score = 116 bits (128), Expect = 8e-21 Identities = 404/621 (65%), Gaps = 31/621 (5%) Strand=Plus/Minus Query 335775 CCGCAACTTCTGGTGCAACTACCGCTGGTAACATCGCTACTCTAAACAAAGTGATTCTAC 335834 ||||||| |||||||||| | | ||||||||||| || | ||||| |||| || | Sbjct 607 CCGCAACCGCTGGTGCAACCAGCAGCGGTAACATCGCAACGATCAACAAGATGATCCTGC 548 Query 335835 CAATTATGCGTCGTGTAATGCCAACCGTTATTGCTAACGAAATCATCGGTGTTCAACCTA 335894 | | ||||||| || |||||||| ||||| || ||||| |||||||| | || || Sbjct 547 CCGTGCTGCGTCGCGTGATGCCAACTGTTATCGCCAACGAGATCATCGGCATCCAGCCGC 488 Query 335895 TGACTGGTCCAGTTGGTCAGATCCACACCCTACGTGTACAATA---------TGCTGATA 335945 |||| | || |||| ||||||||||||||| | || | || | || | Sbjct 487 TGACCAGCCCTGTTGCTCAGATCCACACCCTGCCCGTTCGCTACAGCGACACCGTTGGTG 428 Query 335946 ACGCACCTGGTGTAATCGCTGGTGAAGAAATGCTTTC--TCCATACAAAATCGCTAAATC 336003 ||| |||| |||| |||||| | | || ||| |||||| | |||||| Sbjct 427 GTGCAGCTGGCGTAACTGCTGGT--ACTGAGGCGTTCAGCCCATACGACATCGCTCGTCA 370 Query 336004 TTACTCTGGTGATCTAAATGCGGATAATAGCAA-CCCACAAGCTGCTCCTACTAGCCA-A 336061 ||| ||| || | | | | |||| ||| |||||||| || || | Sbjct 369 CTACAGCGGT------AACGAGAACCCT-GCAATGCCAGGCGCTGCTCCAAC-CGCAACT 318 Query 336062 CTAGAAGGTACTATGGGTCGTCGCGTTAACATCCGTATTCTACGTGAAACTGTTGAAGCG 336121 || ||||| | ||| ||| | | ||||| || || || || ||| | | Sbjct 317 CTGGAAGGCCGTCCGGGCAACCGCATGAGCATCCAGATCCTGAAGGAGACCGTTCAGGTC 258 Query 336122 AAATCTCGTCGTCTATCTGCACGTTGGACTGTTGAATCTGCACAAGATGCTCAATCCCAA 336181 || | |||||||| || |||||||||||| | || | || || ||| | || | || Sbjct 257 AAGACCCGTCGTCTGTCCGCACGTTGGACTTTCGAGGCCGCTCAGGATTCGCAGGCTCAG 198 Query 336182 CATGGTGTTGACGTTGAAGCAGAACTAATGGCTGCAATCGCTCAAGAAGTTACTGTAGAA 336241 || || | ||| | || || || | |||||||| |||| || ||| | |||| ||| Sbjct 197 CAGGGCATCGACATCGAGGCTGAGGTGATGGCTGCTCTCGCGCAGGAAATCACTGCTGAA 138 Query 336242 ATCGACCAAGAGCTACTAAGCCGTCTACGTGCACTACCTGG---TGCTGCTGCTGTAACT 336298 |||||||| ||| | | | | || ||| || || || ||| |||||| Sbjct 137 ATCGACCAGGAGATCTTGACCTCGCTGCGTCGTCTGCCAGGCACCCCTGGTGCTGT---G 81 Query 336299 TATGACCAATCTAAAGTTACTGGTGTTGCAACCTTCGTTGGTGATGAGCACGCTGCTCT- 336357 || ||||| || | ||| ||| |||||||| ||||| ||||||||||| || Sbjct 80 TACGACCAGAGCGCTGTCTCCGGTACTGCGACCTTCGTCGGTGACGAGCACGCTGCCCTC 21 Query 336358 AGCTACTCTAATTAACCGTCA 336378 ||| ||| || |||||||| Sbjct 20 AGC-GTTCTGATCAACCGTCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113278365557644