Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq26752 107 2e-18 seq109654 89.7 5e-13 >seq26752 Length=1779 Score = 107 bits (118), Expect = 2e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 || ||||| || ||| | ||||||||||||||||| ||||| | || || ||||||| | Sbjct 319 TAGGTCTCGATTGCGGCCTCGATGTCGTCGCCGTGGATGCCGACAGCAACACGCATGATC 378 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 ||||||||||||| |||||||||| || || |||||||||| ||||| Sbjct 379 ATGTGCTGTGGTCTCTCGGCAACTTTGCCGTCAATGCGGAGAAGATATGAGCGCTCGAGC 438 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | |||||||| | ||| | || || | ||||| | ||||||| Sbjct 439 GTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCCG 490 >seq109654 Length=28343 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | | ||||| || ||||||||||||||| | ||| || |||||| Sbjct 18668 ACCAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCTTCA 18727 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | | ||| || ||||| || || ||||| || || Sbjct 18728 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 18787 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | || |||| | || ||||||| ||| | ||| || Sbjct 18788 ATCTTGGCTTTGACGTTGTCGATGGTGTCGGATGATTCGACTTCGAGCGTGATCGTCTTT 18847 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||| || | ||| |||||||| Sbjct 18848 CCGGTCAAAGTCTTAACGAAGATCTGCAT 18876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475821955683360