Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq109654 91.5 1e-13 seq86116 86.0 6e-12 >seq109654 Length=28343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || |||||||| |||||||| ||||||||||| | | Sbjct 18876 ATGCAGATCTTCGTTAAGACTTTGACCGGAAAGACGATCACGCTCGAAGTCGAATCATCC 18817 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| || || || || || || || || || || ||| Sbjct 18816 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 18757 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | ||| || || || ||||||| ||| || ||| ||||| Sbjct 18756 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGAACCCTCGCCGACTACAAC 18697 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 ||||| || || |||||| ||||| | ||| |||| Sbjct 18696 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTAAG 18662 >seq86116 Length=13258 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| | || |||||| | ||||| | || |||||| | Sbjct 3618 CATGCAAATCTTTGTCAAAACCCTTACTGGAAAAACCATCACCTTGGAGGTCGAAAGCTC 3559 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || | || || || ||| || || || ||||| || || || || Sbjct 3558 CGACACAATTGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATCCCACCAGACCA 3499 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | |||| || ||||| || || || || | | | | | ||||||||| Sbjct 3498 GCAGAGATTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACTCTTGCCGATTACAA 3439 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || |||||||||||| |||| || || Sbjct 3438 CATCCAGAAAGAATCCACCCTTCACTTGGT 3409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444357345928320