Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq109206 257 2e-62 seq67444 150 3e-30 seq9444 134 2e-25 seq26752 118 2e-20 seq75625 114 2e-19 >seq109206 Length=27697 Score = 257 bits (284), Expect = 2e-62 Identities = 375/525 (71%), Gaps = 10/525 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | ||| ||||| |||||| || |||||||||||||| || Sbjct 8582 TGTTCCCGATTCAGTACCCGGAGATTTGGGAGATGTAC-AAGAAGGCCGAGGCCTCGTTC 8524 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || |||||||| || ||| | |||| ||| |||| | ||| | Sbjct 8523 TGGACGGCGGAGGAGGTGGATCTCTCCCAAGACAATACCCAATGGGAGAACATGACTCCC 8464 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 || ||| || ||||| || || || || || ||| |||||| || |||||||| Sbjct 8463 GATGAGAAGCACTTCATTTCCCATGTTCTTGCTTTCTTT-GCCGCCTCAGACGGCATCGT 8405 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 ||||| || ||||| | || ||||| ||| | ||| | | ||||| ||| || Sbjct 8404 TTTGGAGAATCTCGCCGGAAGGTTCATGAAGGAGATTCAAGTCGCGGAGGCGCGTGCCTT 8345 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||| |||||||||||||| ||||| || || |||||||| | ||| ||| || | || Sbjct 8344 TTATGGGTTCCAGATCGCTATCGAGAATATTCACTCTGAGATGTACAGTCTCTTGTTGGA 8285 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 || ||| | || ||||||| |||||| ||| |||||||| ||||||||| || | || Sbjct 8284 GACTTACATTAAAGACCCGGCTGAGAAGAACCGCCTCTTTCACGCCATCGAGACCATTCC 8225 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | ||| || ||||| | ||||| |||| ||||||| || ||| || | Sbjct 8224 TTGTGTGGCCAAGAAGGCTCAGTGGGCCATGAGGTGGATC------GACGGCTCAGAATC 8171 Query 1456173 TTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| || |||||| | ||| || ||| |||||||||| ||||| ||||| || || || Sbjct 8170 TTTCGCGGAGCGGTTGATCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTT 8111 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| || |||||||| ||||| ||||| | ||||| ||||| Sbjct 8110 CTGCGCGATATTTTGGCTAAAGAAACGCGGGTTGATGCCGGGTCT 8066 >seq67444 Length=6066 Score = 150 bits (166), Expect = 3e-30 Identities = 295/427 (69%), Gaps = 13/427 (3%) Strand=Plus/Plus Query 2133421 GCCTGGGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGG 2133480 |||||||||| || | ||||| ||| | || ||||| |||| ||||| ||||||| Sbjct 740 GCCTGGGCGAAGACCCGGAACGCGAAGGCTTGCTCGACACTCCCAAGCGCGCCGCCAAGG 799 Query 2133481 CCATGGTGGAGCGCACGCGCGGCCATC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCC 2133539 ||||| | | | | |||| | ||| ||| ||| || |||| ||| || Sbjct 800 CCATGCGGTACCTGTGTCACGGCTACGAGCAAAACC-TGGAAGAGATCGTCAACGGTGCG 858 Query 2133540 CTCTTTGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATG 2133599 || || | | ||||||||||||| | || || || || | ||| || Sbjct 859 CTGTTCACCTCCGATAATGACGAGATGGTGATCCTCAAGGACATCGAGTTGTACTCGCTG 918 Query 2133600 TGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGC 2133659 ||||||||||||||||||||||| |||||||||||||| |||| ||| | ||| | ||| Sbjct 919 TGCGAGCACCACCTGCTGCCCTTCATCGGCAAGGCCCATGTGGCCTATATCCCCACCGGC 978 Query 2133660 AAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAA 2133719 ||| | | || ||| ||| | ||||||||||||| ||||| || ||| | || Sbjct 979 AAGGTGCTGGGCCTGTCGAAGCTGGCGCGCATCGTCGATATGTTCGCCCGACGCCTGCAG 1038 Query 2133720 GTACAGGAGGCACTCACGCGCCAGATCGCCGAGAGCGTGAGCCAG---GTTA--CGGGCG 2133774 | ||||| |||||||| ||||||||||| || || |||| || | | ||| Sbjct 1039 ATCCAGGAAAACCTCACGCGGCAGATCGCCGA---CGCGATCCAGGACGTGACCCAGGC- 1094 Query 2133775 CGCGCGGCGTCGGCGTCGTCCTCGAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGTGC 2133834 ||| |||||| | ||| || |||| | | |||||||||| || |||||||| ||| Sbjct 1095 CGC-CGGCGTGGCCGTGGTGATCGAAGCCAAGCACATGTGCATGATGATGCGCGGTGTG- 1152 Query 2133835 GCAAAAC 2133841 | ||||| Sbjct 1153 GAAAAAC 1159 >seq9444 Length=1116 Score = 134 bits (148), Expect = 2e-25 Identities = 283/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 2133423 CTGGGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCC 2133482 || |||||||| || | ||||||||||| || ||||| || | ||| | |||||||| Sbjct 171 CTCGGCGAGGACGTTTCCCGCGAGGGCCTGCTCGACACGCCAAAGCGTGCCGCCAAGGCG 230 Query 2133483 ATGGTGGAGCGCACGCGCGGCCATC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCT 2133541 ||| | | | | |||||| || ||| ||| |||| || | | | || ||| | Sbjct 231 ATGCAGTACCTCTGCCGCGGCTATGAGCA-GACTCTGGAAGAAGTCACCAATGGTGCCTT 289 Query 2133542 CTTTGACGAGG-CGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGT 2133600 || | | | | | ||| |||||| ||| || || || || | ||| ||| Sbjct 290 GTTCAGCTCCGACAACAG-CGAAATGGTGCTGGTCAAGGACATCGAGTTGTACTCGCTGT 348 Query 2133601 GCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCG-GGC 2133659 |||| ||||||||| |||| || ||||||||||| ||||| | |||| | |||| | ||| Sbjct 349 GCGAACACCACCTGTTGCCGTTCATCGGCAAGGCGCACGTAGCCTACAT-CCCGAGCGGC 407 Query 2133660 AAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAA 2133719 || | | || ||| |||| | |||| || |||||||||| | |||| | || Sbjct 408 AAAGTGCTGGGCCTGTCCAAGGTTGCGCGGATTGTCGACATGTACGCGCGCCGCCTGCAG 467 Query 2133720 GTACAGGAGGCACTCACGCGCCAGATCGCCGAGAGCGTGAGCCAGGTTACGGGCGCGCGC 2133779 | ||||| |||| |||||||||||||| |||| || || || ||||| | Sbjct 468 ATCCAGGAAAACCTCAGCCGCCAGATCGCCGACGCGGTGATGCAAGTGACCGGCGCCCTG 527 Query 2133780 GGCGTCGGCGTCGTCCTCGAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGTG 2133833 ||||| | ||| || |||| | | |||||||||| || |||||||| ||| Sbjct 528 GGCGTGGCCGTGGTGATCGAAGCCAAGCACATGTGCATGATGATGCGCGGTGTG 581 >seq26752 Length=1779 Score = 118 bits (130), Expect = 2e-20 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 259965 CGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCA 260024 |||| ||||| || | |||||||||| || || ||||| ||||| || || |||| Sbjct 241 CGTCTTGCTTCCTCATCGACATGAAGGATGACAGCATTGAGGGTATCTACGATACTCTCA 182 Query 260025 AGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGC 260084 || ||||| | ||||||||| || || || || ||| | | | ||| | | Sbjct 181 AGATCTGCGCCATGATCTCCAAGAACGCTGGTGGTATTGGTCTCAACACTCACCGCATTC 122 Query 260085 GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGC 260144 | ||| | ||||| ||| | | |||||||| ||| |||||||| || |||||||||| Sbjct 121 GTGCCACTGGCGCTTACATTGGTGGCACCAATGGCACTTCCAACGGTCTCGTGCCCATGC 62 Query 260145 TTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||| || | ||| |||| || ||||||||||||||| Sbjct 61 TTCGTGTCTACAACAACACCGCTCGCTACGTCGACCAG 24 >seq75625 Length=8981 Score = 114 bits (126), Expect = 2e-19 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 698554 CGGGCTCGCGCATGGCCTCGTGGTCATAGTGGTA--GGTCGCTGACTTGGAGAGGAGGAA 698611 |||||||| || |||||| ||| || |||| | ||||| ||| ||||| ||||| Sbjct 8524 CGGGCTCGGCGATTGCCTCGGCGTCGAAGCGGTACCGCTCGCT--CTTCGAGAGCAGGAA 8581 Query 698612 AACATACTCGTGGGCGCGCGTCGGACGGTCGCGCACGGACTCGGGCTGGCAGTTGGGCTT 698671 | |||||||| || ||| |||||| | | ||| ||| ||||||||| Sbjct 8582 CAGGTACTCGTGCGCCTTCGTGCAACGGTCCTCGATGCTCTCCGGCATCGGGTTGGGCTT 8641 Query 698672 GTGCCATATGATGTCGGAGCGCAGGTACCAGCCGTCGGCCTGGAGGGCAAAGGCCACGCG 698731 ||| |||||||| |||||| |||||||||| ||||| || || ||||| ||||| Sbjct 8642 CGACCAGATGATGTCCTGGCGCAGCCACCAGCCGTCTGCCTGCAGCGCGAAGGCGACGCG 8701 Query 698732 CCACGGCAGCCCAATGAGGTCCTTGGCCTTGAGGCC 698767 |||||| | || || |||||||| | ||||||||| Sbjct 8702 CCACGGGATGCCGATCAGGTCCTTCGGCTTGAGGCC 8737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7165033646309112