Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_026597.1 Length=63334 Score E Sequences producing significant alignments: (Bits) Value seq25666 129 2e-25 >seq25666 Length=1659 Score = 129 bits (142), Expect = 2e-25 Identities = 210/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 29525 CGGCCGGGCGCCGAAGCAGAACCCGGCGCTGTTCGCGCTCGCGATCGCCGCAGCGGCCGA 29584 ||| || || || ||| | | || || ||||| | ||| || || || | || || || Sbjct 475 CGGTCGTGCTCCCAAGAACGATCCTGCTCTGTTTGTGCTGGCAATGGCTTCGGCTGCTGA 534 Query 29585 CGACGTCAACGGTCGTCGCGCCGCGCTGGCCGCCCTGCCGCAGGTGGCGCGCACCGGCGC 29644 ||| || ||| ||||| || || | | || ||||| |||| || || | ||| | Sbjct 535 CGATGTGAACACCCGTCGTGCTGCATTCGAGGCGCTGCCCAAGGTAGCTCGTATCGGAAC 594 Query 29645 GCACCTGTTCCTGTTCGCGAAATACGTTGAGCAGTTCCGTGGTTGGGGTCCGGCGCTCAG 29704 ||||||||||| | ||| || ||||||| |||||||||||||||| | ||||| | Sbjct 595 GCACCTGTTCCACTACGCTGCATTCGTTGAGGAGTTCCGTGGTTGGGG--CCGCGCTTTG 652 Query 29705 -GCGCGG-TGTCGCTGACTGGTACCTGGACCGCAGCGTCGACGGGCTGGCGTATCAGGTG 29762 || || ||| || |||||||||| ||| || ||| | |||| | |||||| Sbjct 653 CGCAAGGCTGTGGCCAACTGGTACCTCAACCAGGATGTTGACCGCTTGGCCAACCAGGTG 712 Query 29763 GTGAAGTACCGGCAGCGTGAAGGCTGGACCCACCGTGACCTGCTGCGCCTGTCGCACCC 29821 | |||| || ||||||||| || |||| | |||| ||||| ||||| || | ||||| Sbjct 713 ATCAAGTTCCAGCAGCGTGATGGTTGGAGCAACCGAGACCTCCTGCGTTTGGCTCACCC 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202216982331620