Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_026610.2 Length=56637 Score E Sequences producing significant alignments: (Bits) Value seq9444 82.4 3e-11 >seq9444 Length=1116 Score = 82.4 bits (90), Expect = 3e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 20566 CGAGATGGTGGTGGTCAAGGATATTCCATTCTTCTCCCATTGCGAACACCATATCGCACC 20625 ||| |||||| |||||||||| || || | ||| | ||||||||||| | || Sbjct 308 CGAAATGGTGCTGGTCAAGGACATCGAGTTGTACTCGCTGTGCGAACACCACCTGTTGCC 367 Query 20626 GATCATTGGTCTGGC-CACAGTAGCCTACATCCCGAACGGGAAGATCGTCGGCCTGTCCA 20684 | |||| || ||| ||| |||||||||||||||| ||| || | | |||||||||| Sbjct 368 GTTCATCGGCAAGGCGCAC-GTAGCCTACATCCCGAGCGGCAAAGTGCTGGGCCTGTCCA 426 Query 20685 AGATCACGCGCTTGGTCGATGCCTTCGCCCGCCGCCTACAAGTGCAGGA 20733 || | |||| | ||||| | ||| |||||||| || | ||||| Sbjct 427 AGGTTGCGCGGATTGTCGACATGTACGCGCGCCGCCTGCAGATCCAGGA 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180831875653288