Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq128333 116 5e-21 >seq128333 Length=65618 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||||| ||| | |||| | ||| |||| ||| || Sbjct 22602 TCCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACTCGTACCATAGGAACAATGCC 22661 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| ||||||||| || | || ||||| || || || Sbjct 22662 ATTTGATGTTCCATTTGTCCCACGAATATAACTCCCCGTAGCACGAATGTTGTGAACTGA 22721 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| ||| | |||||| |||||| || || ||||| Sbjct 22722 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCGTATAT 22781 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| | ||| || ||||| Sbjct 22782 GCCTTCAATGCTATCATCTTTCATGCACAAAAGGAAGCAGCT 22823 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | ||| || | || ||||| || ||||||||||| | ||| | || | Sbjct 22951 GTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATGTGA 23010 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||| | ||||| ||||| | |||| || |||||||| | || || | ||||||| Sbjct 23011 TATGTCTTGATAGCAGATTCAACATCCTCCTTGTGAATTCCAACAGCAACCCTCATCAAC 23070 Query 70111 ATATGCTGAGGTCGTTC--TACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || || || |||| ||| || | ||| | | || ||||| |||||||| | || | Sbjct 23071 ATGTGTTGCGGTCTTTCAATAACTTTTCCT--TGTACCTTCAAGAGGTATGACCTCTCAA 23128 Query 70169 GAGTTTTAAACCCAAAATA 70187 | ||||| || |||||||| Sbjct 23129 GGGTTTTGAAGCCAAAATA 23147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685771313372640