Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_027334.1 Length=47800 Score E Sequences producing significant alignments: (Bits) Value seq106059 221 4e-53 seq62642 84.2 7e-12 >seq106059 Length=24863 Score = 221 bits (244), Expect = 4e-53 Identities = 470/695 (68%), Gaps = 10/695 (1%) Strand=Plus/Plus Query 26233 GGGCTTGCT---CATGCTGCGGCCTCCTGG--GCGGGTG-TGAAGATCTGCAGAACATCG 26286 ||||||||| || |||||||||| | || | ||||| ||| || | | | ||| Sbjct 16998 GGGCTTGCTGGTCACGCTGCGGCCTTCCGGTTGAGGGTGCTGACGAGTTCGATGATCTCG 17057 Query 26287 CCGGCGA-AGGCGG-CGGCGTTTTCGCGGGCGCCGACGAGGCCGTTGACGCTCGCCGGAT 26344 || ||| || || ||||||| || ||| | ||| ||||| ||| | || | Sbjct 17058 CC--CGACAGACGCTCGGCGTTCTCCTTCGCGGCTGGGAGCCCGTTCACGAGGGATGGGT 17115 Query 26345 CCAGCTCGTCGAGGGCGAGCCGGTAATAGAACATCGCCTTGAAGGCGGACCGCTCATGGA 26404 ||||||| |||| | | | ||| |||||| |||| |||| | |||||| | || Sbjct 17116 CCAGCTCAACGAGTGTCTGGCCGTACGTGAACATGCTCTTGTAGGCAGCCCGCTCGTTGA 17175 Query 26405 GCGCGGTGGCGATCGTCGGCACGCCGCTGTCGCGCAGCTCGGCCATGATGGCGCGCTCGA 26464 | |||| | ||| | ||| |||||||||||| | ||||| |||| Sbjct 17176 GGTGCGTGGTCAGGACCGGGATCCCGGCCTCGCGCAGCTCGTCGATGATCATCTTCTCGT 17235 Query 26465 GGCGGGTGGCGATCTGCGGCGAGGTGCGGGTGAAGGCGACCCGAAACGGGATGTCCCGTT 26524 ||||| | |||| | ||| || |||||||| || || |||||||| |||| Sbjct 17236 TCCGGGTCGGGATCGCTGACGACGTACGGGTGAACAGCACACGGAACGGGATCGCCCGGC 17295 Query 26525 CGAAGCTCTGTTCTTCCTCGCGCACCAGCTGGATCGCCTTGGCGGCCATCTCGGCGTCGG 26584 ||| ||| || ||||| |||||| || || ||||||| | |||||| Sbjct 17296 CGACCACCTGCTCCTCCTCCTGCACCAAGCCGACAGCGCGGGCGGCCTGTGCCGCGTCGA 17355 Query 26585 TGGCGCTGGCCTGGATCGGGATGATGACCAGCTGGGCCCGGCTCAAGGCGCGCGAGGTCA 26644 ||| |||||| |||||||| | || || | || ||| | | |||||||||| || Sbjct 17356 CTGCGGAGGCCTGCATCGGGATCAGCACTAGGTCGGACCGCATGATGGCGCGCGAGACCA 17415 Query 26645 GCCGCGAGGCGGTGCCTTCCAGGTCGACGATAACGAATTGCCGCCGGGTGCGCTCATCGT 26704 || || |||||||||||||| || | ||||| || || || ||||| ||| Sbjct 17416 TGCGGCTCGCCGTGCCTTCCAGGTCCACCAAGACGAACTGGCGGGCGGCACGCTCGGCGT 17475 Query 26705 CGAGGCGCGTCAGGATGGTGCTCTCGGTGATGTCGCCGATGACCTCGAGCGGGTTCGCGC 26764 ||| || | |||| |||||| | |||||||| |||| | | | || Sbjct 17476 CGATCGCCGAGACGATGCCGCTCTCCCCAACGTCGCCGAGTACCTTCATGGCAGTGCTGC 17535 Query 26765 TGGCGCCGCTGCGCCATGCGGCGATCGGTCGGTTCGGGTCGCAATCGAGCACCGTGACGG 26824 || | || || ||| | |||||||| |||||||||||||| ||||||| ||| |||| Sbjct 17536 TGCCCCCCCTCGCCCAGCCCGCGATCGGGCGGTTCGGGTCGCAGTCGAGCAGCGTCACGG 17595 Query 26825 TGGCGCCCTCGGCGGCGAGGGTGGTCGCCAGCACCAGCGCGGTGGTGCTTTTTCCGGCGC 26884 ||||| | | ||| || || || ||| ||||||||| || ||||| |||||| |||| Sbjct 17596 TGGCGTCATGGGCCGCCAGCGTCGTCCCCAGCACCAAGGCCGTGGTCGATTTTCCAGCGC 17655 Query 26885 CGCCTTTGGGGTTCGCAATGGCTATGACGGGCATG 26919 ||||||||||||| || || | ||||||||||||| Sbjct 17656 CGCCTTTGGGGTTGGCGATCGATATGACGGGCATG 17690 >seq62642 Length=4899 Score = 84.2 bits (92), Expect = 7e-12 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 31370 CACCCCATTGCTTGAAGGTGAAGGCGACGCCAGCGTCGGCGCACTGGTCGCGAATGCCGC 31429 ||||||||||||||||| |||||| || || || || |||| ||||| | | | | Sbjct 4683 CACCCCATTGCTTGAAGAAGAAGGCCACACCGGCCACGACGCATTGGTCCCTGACCTCCC 4742 Query 31430 GAGCCCAATCGGGATGCATCGGCCGGGCGCCGGATCCGCTCTCGCCGCCGGCGACAATCC 31489 | |||| || || | |||||| | ||||| || || |||||||| ||| ||| | || Sbjct 4743 GGACCCACTCCGGGTCCATCGGTCTGGCGCGGGGGCCACTCTCGCCACCGACGATGACCC 4802 Query 31490 AGTCGATGC 31498 ||||||||| Sbjct 4803 AGTCGATGC 4811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152597961888944