Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq4281 149 3e-31 >seq4281 Length=1049 Score = 149 bits (164), Expect = 3e-31 Identities = 344/517 (67%), Gaps = 6/517 (1%) Strand=Plus/Minus Query 63685 CCTTGAGCACAAAGCCGATGAAGTAATGGACC---TCGCTCAGCGGGTAGTTCAGCAGAT 63741 ||||||| | || |||| ||||||||| ||| |||| | ||||| || | | Sbjct 582 CCTTGAGGATGAACCCGACGAAGTAATGCACCACTTCGC---GGGGGTACCCGAGTCGTT 526 Query 63742 TGGTGGCTGCATCGAACGTCTTGGGCACCAGCTCGATATCCCCGGCAATGATCCAGTCGT 63801 || |||||||| || ||||||| || | || || ||||||||||||| Sbjct 525 CAAACGCAGCATCGAATGTGAGCGGCACCAAGTCCAGGTCGCCATTGATGATCCAGTCGT 466 Query 63802 AGTCCTCAATCTGCACGAAGTCGTAGTTGGGGTAGCTCCACTCGGCAATGGGGAAGTTCA 63861 | ||||| ||||||||||||||||| || || |||| | | | |||||||||| Sbjct 465 AATCCTCGATCTGCACGAAGTCGTAATTCGGCGCCTTCCAGTATTCGACCGGGAAGTTCA 406 Query 63862 GCCGGTAGGTCAGCTCCGACGCCGGGCTCATGATCTGCGGGGTAAAGAACAGCAGCGTGG 63921 |||| | |||||||| || || ||||||||| ||||| |||||||||||||||| Sbjct 405 GCCGCTTTGTCAGCTCACTCGATGGCGACATGATCTGAGGGGTGAAGAACAGCAGCGTGG 346 Query 63922 CCTTGGAACCAGGGATGAGAGACTTCACCCGGTCACGGATGTAGTTGGTGCTGTCCCCCA 63981 ||| | | | |||| | ||| || ||| || || | ||||| | |||| Sbjct 345 CCTGTGCATCGGGGAACTCGGCCTTGACGATGTCGCGCATCTGATTGGTTGACTGGCCCA 286 Query 63982 GCTTCTTTCGCAGCCAGTCCACATACGGCCACTGGTTGCTGGCCACCGGGTCGAAGATGC 64041 |||| | |||||| || || || || |||| | | | || ||||| || Sbjct 285 GCTTAGCGCACAGCCAATCGACGTAAGGATACTGCACCGGGTCGAGCGCATCGAAAATAT 226 Query 64042 TTTTGATGTAGGGAGTCGGCACCTGGTTGCCGGTCTCGGCCTCGTACAGGACCATCGTCG 64101 | ||||| | || || ||| | | ||| ||||| || | ||||| | | ||| | Sbjct 225 TCTTGATCCACGGCGTGGGCGCGTACAAGCCCGTCTCAGCGTGATACAGCTCGAGCGTTG 166 Query 64102 CAGGATCGTACAGGCAGGGTGCATTCTTCCCTTCCCCGGTCGAGTAGCTGCCGTCCCACC 64161 | | || || | ||| || ||||| | ||| | |||| ||||||||||| Sbjct 165 CCGCGTCATAGATGCACGGGCTGTTCTTGCTGGTGCCGTTGTTGTAGGAGCCGTCCCACC 106 Query 64162 ACCATGGTTCGCCGATCTGGAACAGCGGCTCCATGCC 64198 |||| || || ||||||||||| ||||| |||| || Sbjct 105 ACCAAGGCTCACCGATCTGGAAGCGCGGCACCATACC 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236261127425636