Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq58005 111 3e-19 >seq58005 Length=4068 Score = 111 bits (122), Expect = 3e-19 Identities = 403/621 (65%), Gaps = 31/621 (5%) Strand=Plus/Plus Query 295693 TGACGGTTAATTAGAGTTGCT-AGAGCAGCGTGCTCATCACCAACGAAGGTTGCAACACC 295751 |||||||| || ||| ||| || ||||||||||| ||||| |||||||| ||| ||| Sbjct 1 TGACGGTTGATCAGAAC-GCTGAGGGCAGCGTGCTCGTCACCGACGAAGGTCGCAGTACC 59 Query 295752 AGTAACTTTAGATTGGTCATAAGTTACAGCAGCAGCA---CCAGGTAGTGCACGTAGACG 295808 | || ||||| || |||||| ||| || || || ||| || Sbjct 60 GGAGACAGCGCTCTGGTCGTAC---ACAGCACCAGGGGTGCCTGGCAGACGACGCAGCGA 116 Query 295809 GCTTAGTAGCTCTTGGTCGATTTCTACGGTAACTTCTTGAGCGATTGCAGCCATTAGTTC 295868 | | | | ||| ||||||||||| | || | ||| || |||| |||||||| | || Sbjct 117 GGTCAAGATCTCCTGGTCGATTTCAGCAGTGATTTCCTGCGCGAGAGCAGCCATCACCTC 176 Query 295869 TGCTTCAACGTCAACACCATGTTGGGATTGAGCATCTTGTGCAGATTCAACAGTCCAACG 295928 || || | ||| | || || || | || | ||| || || | || | ||||||||| Sbjct 177 AGCCTCGATGTCGATGCCCTGCTGAGCCTGCGAATCCTGAGCGGCCTCGAAAGTCCAACG 236 Query 295929 TGCAGATAGACGACGAGATTTCGCTTCAACAGTTTCACGTAGAATACGGATGTTAACGCG 295988 ||| || |||||||| | || | | ||| || || || || ||||| | | ||| Sbjct 237 TGCGGACAGACGACGGGTCTTGACCTGAACGGTCTCCTTCAGGATCTGGATGCTCATGCG 296 Query 295989 ACGACCCATAGTACCTTCTAGT-TGGCTAGTAGGAGCAGCTTGTGGG-TTGCTATTATCC 296046 ||| | ||||| || | || || |||||||| ||| |||| | | | Sbjct 297 GTTGCCCGGACGGCCTTCCAGAGTTGCG-GTTGGAGCAGCGCCTGGCATTGC-AGGGTTC 354 Query 296047 GCATTTAGATCACCAGAGTAGGATTTAGCGATTTTGTATGGA--GAAAGCATTTCTTCAC 296104 | || ||| |||| |||||| | |||||| ||| || | | || Sbjct 355 TCGTT------ACCGCTGTAGTGACGAGCGATGTCGTATGGGCTGAACGCCTCAGT--AC 406 Query 296105 CAGCGATAACACCAGGTGCGTTATCAGCA---------TATTGCACACGTAGGGTGTGGA 296155 |||| | || |||| ||| | || | || | || | |||||||||| Sbjct 407 CAGCAGTTACGCCAGCTGCACCACCAACGGTGTCGCTGTAGCGAACGGGCAGGGTGTGGA 466 Query 296156 TCTGACCAACTGGACCAGTCATTGGTTGAACACCGATGATTTCGTTAGCAATAACGGTTG 296215 ||||| |||| || | |||| || || | |||||||| ||||| || ||||| |||| Sbjct 467 TCTGAGCAACAGGGCTGGTCAGCGGCTGGATGCCGATGATCTCGTTGGCGATAACAGTTG 526 Query 296216 GCATTACACGACGCATAATTGGTAGAATCACTTTGTTTAGAGTAGCGATGTTACCAGCGG 296275 |||| || ||||||| | || || |||| ||||| | || ||||||||||| | Sbjct 527 GCATCACGCGACGCAGCACGGGCAGGATCATCTTGTTGATCGTTGCGATGTTACCGCTGC 586 Query 296276 TAGTTGCACCAGAAGTTGCGG 296296 | |||||||||| ||||||| Sbjct 587 TGGTTGCACCAGCGGTTGCGG 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1111939841362848